CI01000049_04341160_04342702


Basic Information

Item Value
gene id CI01000049_04341160_04342702
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4341058 ~ 4342702 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_04341160_04342702.mRNA
CGGCCCTCACCCTGCAAGAATCTCTTAGACTTTTCGGAGAGCTGTGGAGGCATTTGCTGCAGGACATTTTGGCTGCTGACAAATGCTGTAGCCGCAGAGTTCTCCATAGAGACTCAAACTGGAGAACTTAATGCAGCCATGTCTGTCTGCATCCCGATCCTGAAGAGAGGAGGATTCTTCTTGACAGGCTCCTTCTCCACAACTGGTTTAAGGTCATCCCATAAGTTGTGGAGACAAGAGCACCCTGTCCCGGCCACCAAGGAAGTGTTCTTTAGTCAGCTTAGCATCTGGCAGGTTTACACAAGTGGCCTCTCCATCCCTCCAGTTCTTAGTGTCATGGCCATCTCTGTAAGAGATGCTGCCCCAGATATTTCTTCCACAAAAGTTCCTATCTTGGACAACCTGGACTCCAAGCCACCCATCATGGTTGACGAGGTCCTAGAGCTCCATGTCTTGGTCGCCCCAGATGTTCCTGTCATGGTATCAGTCAGAGCTGGTACTCTGTGCCACCTCAGTCGCAGGGATCCCTGTTGAAGACATGTAAAGTCTAATTGGTCAAACACAAATTAGATGAGTTCAAAATACTTAGAAGTCTGATGCAAATAATTGCCTTTTGAAATAATTTTTTGAAGTAAA

Function

NR:

description
hypothetical protein cypCar_00029104

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_04341160_04342702.mRNA True 636 mRNA 0.47 4 4341058 4342702

Neighbor

gene id symbol gene type direction distance location
CI01000049_04296486_04310931 SMAD1.L, SMAD1, SMAD1.S coding downstream 27951 4295126 ~ 4313107 (-)
CI01000049_04144005_04150776 NA coding downstream 190282 4143984 ~ 4150776 (-)
CI01000049_04126260_04127962 NA coding downstream 210607 4125683 ~ 4130451 (-)
CI01000049_04094686_04123864 FREM3 coding downstream 216762 4094124 ~ 4124296 (-)
CI01000049_03993313_03994107 NA coding downstream 346951 3992645 ~ 3994107 (-)
CI01000049_04380746_04381576 NA coding upstream 36150 4378852 ~ 4382808 (-)
CI01000049_04386375_04434840 ZNF827 coding upstream 43673 4386375 ~ 4434840 (-)
CI01000049_04453790_04454764 NA coding upstream 110718 4453420 ~ 4456017 (-)
CI01000049_04644316_04648048 NA coding upstream 301598 4644300 ~ 4648729 (-)
CI01000049_04693311_04693646 NA coding upstream 350584 4693286 ~ 4694727 (-)
G208467 NA non-coding downstream 11239 4329592 ~ 4329819 (-)
G208436 NA non-coding downstream 13217 4323822 ~ 4327841 (-)
G208462 NA non-coding downstream 18703 4322145 ~ 4322355 (-)
G208461 NA non-coding downstream 21625 4319212 ~ 4319433 (-)
G208459 NA non-coding downstream 47963 4292867 ~ 4293095 (-)
G208438 NA non-coding upstream 64179 4406881 ~ 4415032 (-)
G208488 NA non-coding upstream 133722 4476424 ~ 4476772 (-)
G208494 NA non-coding upstream 145394 4488096 ~ 4488355 (-)
G208495 NA non-coding upstream 145880 4488582 ~ 4488787 (-)
G208510 NA non-coding upstream 163097 4505799 ~ 4506028 (-)
G207278 NA other downstream 2352291 1987011 ~ 1988767 (-)
G206938 NA other downstream 3513413 825859 ~ 827645 (-)
G206850 NA other downstream 3707863 632680 ~ 633195 (-)
G206849 NA other downstream 3709482 631143 ~ 631576 (-)
G209491 NA other upstream 1685387 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 3712931 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 4108440 8451142 ~ 8454233 (-)
G211175 NA other upstream 4122591 8465293 ~ 8476265 (-)

Expression


Co-expression Network