CI01000049_04380746_04381576


Basic Information

Item Value
gene id CI01000049_04380746_04381576
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4378852 ~ 4382808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_04380746_04381576.mRNA
ATGTAGTCTCTGGGGATTCTCTGCTAATTCTATAATATTTACATAATCCTATATGAAATCCAAGAAAAGCAGCAATAAATGCACCCCATAGGAATATGTTATTCCTCAGAGGCTGCTTTTTCAAAGCTCAGGCAAATTTTCAGTTGCAGTTCATTGACCTTATCTCAAATGTTTCTCCAAACATTGCTTAGGAAAAAATAAAATATACCAAATGATACATGCTGGAAGATTATAGAGCTGTGATATTCATTTATTTATTTTGAGACAGTCCTCAAGATGACTTTCATGTTTTTCAGATAAAATTGCTTTTGATCAAAAACACTTTACTTTTACATCCCTTTTTTGGGTCAGCCAGCTGCTGGTCTGTAATTGAGGTGTACCAGTGGTTTATGTTGTATGATGTCATACTTTCTTCTGGCACACATTTAAGTATTTTTGTATTGTTCTCCAATATGTATATATGTAAAATACGCTTCTTTTATTGTTTTACTGTATCTACTGTTCGTCTTTACTACCCTTATAATCTGTTTGTTATTAATTTGTTAACTTTTACTAAGCAGCTGCTATTGTTTCAACAAAAATTTTCACAAATAATGAACTAATTTTTGGTCTCTTAGACAAACTCCAGAGTCGTTGCACAATAAAGATTCAGAACATAAGAGCAGTAGTGATCAAATACATTTTGCTCACTGTCAGCTGATGGGAGTCTTGTATGTGTATTATGGCTGCCCAGCTGCTTTTTTAGTCAGGGCGAGAGAGTTTCACAGCGCTCTAGTTCAGTGTTGAGGTAGAGAGGCGCCCTTCACAGTGTGCTTTCTGAGGTCATTCTGTTCTGCAGGGTTTGTGAAGCGCTTTGGGGCCCTGAGCAGATGAAAGGTGCTATTTAAATGTAAGTGCCACTCATTTATTCATTTACCTTCATCTGATTCCCGTTCCAACCTGTCCGCAACCACACTGCCATACACACACACACCCTCTAACATGTAGCAGTGTACACACAGACTGTAGTTTGTATATACACGACAGAGGGTAAGACACACTAAATGCCTCCTTCATCCCTTCCCTTTGTCCATTCTGTGTGTTCTTCATTTCATTTAAGAGAACAGAGTGTGTTTTCTCATTCGGGAGGTGCATTATTAAATGTCTCCCACCTCTGTGTCCTACACCCTGCTCCTCCTGTCTCTTTGACCAGGTGCCCTCTCTGCATCTACTCCACCAACAGGCCAGCCGCCATGGAGGGCCACCTGAAGACGCACTACAAGATGGAGTATCGCTGCCGCATCTGCCAAGCCGTGTGGGCCAATCAGGCAGAGCTGGAAAGGCACACGCGTGCTCACCGCCTGGGCAACCACTACAAGTGCGAGCAGTGCGGCTACCTCTCCAAAACAGCCAACAAGCTCATCGAGCACGTGCGCGTGCACACCGGCGAGCGGCCTTTCCACTGCGACCGCTGCAGCTACAGCTGCAAACGCAAGGACAATCTCAACCTCCATAAGCGGCTCAAGCACGCTCCGAGACAGACCTTCGGTTGCGCCCAGTGCCCGTTCACCACCACTCACCCGTTCGTCTACAGCCGGCACGTTAAAAAGCACCAAGGCGGGGAGGGGAGCGCCGAGGAAGGTGAGGCTCGGCCAGGTACGCCGCGCCCGGGCCTTTTGGAGCGAGGTGGGAGCAGCAGCGGGAGCGGGGACAGCGGGAGCACCAGTCCGCTCATGAATCTGTCCGCCTCTCAAGCCTTGCAGTCTGTCGCCCTGTCAATCACCAGCAAGCAGCAAGACAGCACGCCAACCGCGCGCTACCTCTCGGCCAACGGCACGTTCTCCACACTGGCGGCTCGCTACTTGGAACAGTACAGGAACTGTGACCTGGCTCACCTCATCCCCCTCACCACGCTCTTTACGGCCCGGCGCTTCACATTCCACAGCCCCTCACCCTCAAACTCCTCACCGCCCTTCTCGGCATTCTGGTCCAACTCATCCTCTCAGTCACCTCCCGCTCCCACGTCGCTTAAACACTCCTTCCTGGCATACCTTGGACTGACAGAGAGAGCTAAGACCATTTGACCATCCTCGTCCCTTCTTCTGCTTCATGGAGTTTCCCCATATCATCAGTCACCTACGCCACTAACTGTTCCACAGGCAGGCTGAAATGCTGCCCTAAAAAGTAGTAATGATAGTAAAACATCCATTTATCAGAGGAAATGCTATTCATGCGCAAGGCATTTCATTTTCTGTTCTATCGCAATCCAATCGTTGCTCTTTTTTAAGAGGTCTTATAACAGTTGTTTTCCTCTGCAAATTGTGAATGACCTGGAATCCGATAATAGTGCTTTATCTATTACAAGTTTTGTATTCGTTTTATTGGGCGAAAGGAAACAAAGAATATATAAGCTTGCAGGCGCTAAGCTTTTTTTGTGCATTTTGTCAGGAATCCGACAGCATGTTCGCTATGTGTTGCAATTGTTTTTTGAAGTCATTTAGGGGCTCAGTATGAAATATCTTGGGGTATACAGTATATGGCACGACAAAAACCAATGAAACGGATAGCTATCTTTCGAGTCTTGTTTCCAAAGCGAAGCCTCAGACCACGCACTTGTTAATTTATCAAGATGTACATAGTTTTGTAGTCTTTTCTTTTATCTTATCCCCCACGCCTGTTGGCATTGACTGGTTCTGCTAAATGGTGAGACCATTGGCAAATGCTAATCTTGCCTCAGCAACAAGCATAAGGCCCTTTACGACACCTGCGAGGCACAGCTGATGGCATTTCTTAATACAAGCCATTCAGGGCACGCTAATGGCAAAAGCAATCATTACCACTACAGCAGTGGTCGTCAACCCATGATGCAGCCCTTTAGTAACCCTCACCCTACTATTGTTCGCTGAAGATTGTGCCATAGCTGACCAAGGTGGGCTGGCCGTATCCAGTAGGCATGAGATGTAAGTGACCAGTCAAGCGCCCTGTGCATAGCTAACGTATATAATGCGCACCCCTACGTTTAACAAGATGTATGAGGTGACAGGTTTTTGGGAAAGACCCACTTATTCTGTCACAAAGGCCGATTCAATGGTGCTTTTTGGAGCTTTTTTGTAATTTTGTGTGTAAAAAAAAAAAAAACTGTTCCAAAATGACTTGAATGAATGTACTTTTTGTTGGTTAATGTTAAAGTGATACAGAGGTAGCTGGACTGTGGTAAGTGAGATCATGGAAAAACAATGGTATCTCGGTGGCCTTCTGTGTCTTAAATTTTGTTCTTCTAGTTGTTTTATTATTTTTTATTATTACTTTTATTTTGAAAGAGCCTTTGAAATGTAAAATACAAATATATATATAAATATATATATCCTGTACTAACAAGCTATTATGAGAACCCCATTGGAAAATGGCTCTCAAGTGCAATGTGGAGGCAGCCATTATTATGAGTAGGATTTGTGGAAGCATGGCTTTCCATATGTGGGCAAACATGGTACCATAATTCTGTGTTCCCCTCTCCGTGTTTTGAGTTTTAATTGCACTTAAACTTTTGAAACGTTTTAAACAAAAGCACTTACATCCAACAGAAAACGTTCTTGATGCCAATTAGTTCACCTGCCTCTTCAGACAGCCTCGATGCTATAAGTAATTGTTTTTTTGTTTTTTTTGTGTTTTGTTTTTTTGTTTTTTGGTCTGCCACAATGGTTGAAAATACACATTTCTAAACCTGTAGGTATTTGCCAAACAACAGTGATTCGCTGCTCCATTTTGATGGATCGTATGGCATGTGTAATGCGGACAGCTGAGTTCAAAATCCCCCTGGACACCAAAGGGCCAGGCTAAATTTTAAACAGCAGTTTTGCACAGTGCTGTAAAAGTTGCACTTTTCTAAACAAAGTATCAGAACACAATTATATTCAATGCTCTAAAATGTAAAACATTCATTGGATTCCCTGCCCATTGTGTTGGCAAGCTCCTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_04380746_04381576.mRNA True 3957 mRNA 0.44 1 4378852 4382808

Neighbor

gene id symbol gene type direction distance location
CI01000049_04341160_04342702 NA coding downstream 36150 4341058 ~ 4342702 (-)
CI01000049_04296486_04310931 SMAD1.L, SMAD1, SMAD1.S coding downstream 65745 4295126 ~ 4313107 (-)
CI01000049_04144005_04150776 NA coding downstream 228076 4143984 ~ 4150776 (-)
CI01000049_04126260_04127962 NA coding downstream 248401 4125683 ~ 4130451 (-)
CI01000049_04094686_04123864 FREM3 coding downstream 254556 4094124 ~ 4124296 (-)
CI01000049_04386375_04434840 ZNF827 coding upstream 3567 4386375 ~ 4434840 (-)
CI01000049_04453790_04454764 NA coding upstream 70612 4453420 ~ 4456017 (-)
CI01000049_04644316_04648048 NA coding upstream 261492 4644300 ~ 4648729 (-)
CI01000049_04693311_04693646 NA coding upstream 310478 4693286 ~ 4694727 (-)
CI01000049_04737253_04749045 PRMT9 coding upstream 354318 4737126 ~ 4749045 (-)
G208467 NA non-coding downstream 49033 4329592 ~ 4329819 (-)
G208436 NA non-coding downstream 51011 4323822 ~ 4327841 (-)
G208462 NA non-coding downstream 56497 4322145 ~ 4322355 (-)
G208461 NA non-coding downstream 59419 4319212 ~ 4319433 (-)
G208459 NA non-coding downstream 85757 4292867 ~ 4293095 (-)
G208438 NA non-coding upstream 24073 4406881 ~ 4415032 (-)
G208488 NA non-coding upstream 93616 4476424 ~ 4476772 (-)
G208494 NA non-coding upstream 105288 4488096 ~ 4488355 (-)
G208495 NA non-coding upstream 105774 4488582 ~ 4488787 (-)
G208510 NA non-coding upstream 122991 4505799 ~ 4506028 (-)
G207278 NA other downstream 2390085 1987011 ~ 1988767 (-)
G206938 NA other downstream 3551207 825859 ~ 827645 (-)
G206850 NA other downstream 3745657 632680 ~ 633195 (-)
G206849 NA other downstream 3747276 631143 ~ 631576 (-)
G209491 NA other upstream 1645281 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 3672825 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 4068334 8451142 ~ 8454233 (-)
G211175 NA other upstream 4082485 8465293 ~ 8476265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015727 NA coding CM030132.1 CM030132.1 18689738 ~ 18716514 (+)