XLOC_009539


Basic Information

Item Value
gene id XLOC_009539
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45300527 ~ 45313039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019253
GGAGGACTACAGGACTGACTGAACTTTACAAATGCCAcaggTATGAAGGCATGTCGGAGGGACATATGAAGGAGATCAGGAAGGATTTCCCTAGAAGATTCATGATGTCAGAAATGGAGAGGATAGATATCACTGCtgCTATGGAGACCACACTGTGGAATTGAGGGAAGCAAGAGCCGAGCGTCAGGAGTGAGCCGCAGCCAGAAGAGAAAGTTATCGACCAACAAAAGGAAAAGAAGTGCGCTGAGAAGAAGTGATCTGGAAATGCCCTAACATTTGAGTGTGTTCCAGTAAAGCTCGTCGTCCTGCTGCCTCTGACTAATCATGTGAAAGGTGGAGATCCACCGTACAGTGTTTGACTATTGGTAAACACACTTCTACTTCCTGTACAGTAGAGAGAAGCAGTCTATTAGTGGTGTTTACTACGTTTCATATTAAGGAACTGTTCAGTTGAGGGTGTTTCATTTCATCTGGAGCTCATTTGAGGACAAACAACTTTCAG
>TCONS_00019254
GAGTGTTTCAGTCTGTCCGCTCGAGCGCATGCGCAGTTATTCCCAGGAGGACTACAGGACTGACTGAACTTTACAAATGCCAcagggtgtgtgtgtttgaatgtggtGTGTTATTTTACGGTTCTCGGGAAAGCCGTGCTGTCTGACGTCATGTTAATTGTGTATCAGGAagtaaaacttatttttaaaaaaataaaaacgcgcATTCTGTGAGATCAGTCTCCGCTCGTGTTCAGAgatcagtgtgtttgtttgtgtgttggcCATATATGACACTCCCAAAAATCCCTCTACTCTTCCATTTTCAGTATGAAGGCATGTCGGAGGGACATATGAAGGAGATCAGGAAGGATTTCCCTAGAAGATTCATGATGTCAGAAATGGAGAGGATAGATATCACTGCtgCTATGGAGACCACACTGTGGAATTGAGGGAAGCAAGAGCCGAGCGTCAGGAGTGAGCCGCAGCCAGAAGAGAAAGTTATCGACCAACAAAAGGAAAAGAAGTGCGCTGAGAAGAAGTGATCTGGAAATGCCCTAACATTTGAGTGTGTTCCAGTAAAGCTCGTCGTCCTGCTGCCTCTGACTAATCATGTGAAAGGTGGAGATCCACCGTACAGTGTTTGACTATTGGTAAACACACTTCTACTTCCTGTACAGTAGAGAGAAGCAGTCTATTAGTGGTGTTTACTACGTTTCATATTAAGGAACTGTTCAGTTGAGGGTGTTTCATTTCATCTGGAGCTCATTTGAGGACAAACAACTTTCAG
>TCONS_00018849
ggtGTGTTATTTTACGGTTCTCGGGAAAGCCGTGCTGTCTGACGTCATGTTAATTGTGTATCAGGAagtaaaacttatttttaaaaaaataaaaacgcgcATTCTGTGAGATCAGTCTCCGCTCGTGTTCAGAgatcagtgtgtttgtttgtgtgttggcCATATATGACACTCCCAAAAATCCCTCTACTCTTCCATTTTCAGTATGAAGGCATGTCGGAGGGACATATGAAGGAGATCAGGAAGGATTTCCCTAGAAGATTCATGATGTCAGAAATGGAGAGGATAGATATCACTGCtgCTATGGAGACCACACTGTGGAATTGAGGGAAGCAAGAGCCGAGCGTCAGGAGTGAGCCGCAGCCAGAAGAGAAAGTTATCGACCAACAAAAGGAAAAGAAGTGCGCTGAGAAGAAGTGATCTGGAAATGCCCTAACATTTGAGTGTGTTCCAGTAAAGCTCGTCGTCCTGCTGCCTCTGACTAATCATGTGAAAGGTGGAGATCCACCGTACAGTGTTTGACTATTGGTAAACACACTTCTACTTCCTGTACAGTAGAGAGAAGCAGTCTATTAGTGGTGTTTACTACGGTAAGTgtgctattgttgttgtttacactTCAAGATAAAGATCTAGA

Function

GO:

id name namespace
GO:0046173 polyol biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019253 False 502 lncRNA 0.45 4 45300527 45312994
TCONS_00019254 False 769 lncRNA 0.44 3 45300527 45313039
TCONS_00018849 True 637 lncRNA 0.43 2 45309602 45312935

Neighbor

gene id symbol gene type direction distance location
XLOC_009537 DYNC2H1 coding downstream 53616 45008585 ~ 45246911 (-)
XLOC_009538 NA coding downstream 108412 45191684 ~ 45192115 (-)
XLOC_009532 gria4a coding downstream 490390 44499187 ~ 44810137 (-)
XLOC_009536 CABZ01037147.1 coding downstream 549897 44750514 ~ 44750630 (-)
XLOC_009535 CABZ01061894.1 coding downstream 636815 44646592 ~ 44663712 (-)
XLOC_009541 CABZ01068246.1 coding upstream 25584 45338623 ~ 45356635 (-)
XLOC_009542 NA coding upstream 52208 45365247 ~ 45407049 (-)
XLOC_009543 fgf12b coding upstream 101844 45414883 ~ 45510977 (-)
XLOC_009544 MB21D2 coding upstream 214242 45527281 ~ 45538773 (-)
XLOC_009545 NA coding upstream 245128 45558167 ~ 45560856 (-)
XLOC_009530 NA non-coding downstream 906753 44370567 ~ 44393774 (-)
XLOC_009528 NA non-coding downstream 1177420 44119233 ~ 44123107 (-)
XLOC_009523 NA non-coding downstream 1280453 43999530 ~ 44020074 (-)
XLOC_009547 NA non-coding upstream 463154 45776193 ~ 45861721 (-)
XLOC_009548 NA non-coding upstream 897944 46210983 ~ 46213819 (-)
XLOC_009549 NA non-coding upstream 944506 46257545 ~ 46268918 (-)

Expression


Co-expression Network