XLOC_000954


Basic Information

Item Value
gene id XLOC_000954
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3844836 ~ 3846864 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003307
cacacactgtgccttttttttctccctcttctCTCTCCGATTGTCTTACCATCGCCATCACCCTCCAATTATTCCGTCGCGTAAATTAAGACAGGGGAGAGGGCAGCGTATTGTGCAGGAAGCTCTTATTTTAAGTCCTCTCATAAATATTCCACCCTGCCCCAAATGTTACAATCGATCTGACGACAGTACAGCAACAGTGAGCCAATGGAAATCCAAGTTCCACTAGTTGAAACACTAGTTAAGATGGCAACGCATCTCCAAAGACGGATTTACGGGAACCTCTCGCCGAAAcgaaattaaaacaacaaaaatatgaacacaGACAACGCTGCATTGGAGGAAGAAGACATCAGCGAAGAAATCACATGCGCATCCGGCGAGATTCAACGCGATAGCAGCCGTACCACTCACAGGCGTCTCGGGGATGCGTACTTTGCGCGTCCGTTTTTGAGAAAAAAGGATAGACTGGCTAGCTTGTGGATACATTCCGTTTAAAATGGACATTGCAGCGGCTGGATTTTGCCGGGGAATGGCAGTGCGCATCAAGAGAAATTCCTAAACTTGCGTTTTTCCTCGTCTCAGCCTGCTGATCGTCACGTTTCCAGGGAGAGTTTGTGATACCCGGGCTGATCACGAACCACTTCACGGATTATCATACAGTCTGGTAAAAGAGGGACCGGTGTCTTCAAGGTTATGGATTGGCTGTGCTCATGATGTATTCGACTTTACCACATTTAAGCGGATGGAATCGGGGTATAATCGATGACGTCGCGTTTTGCTTTTAATCAACTCGCGTCTTTCTCGCCCGAGGGATGAGCTATGACTGTCACATTTACCGTCAAATGGAGAAATTCAACATAGGCACCTTTGTGAAACGTTGATGTGTCGTGCACTCCGTGGGTTTAACTTCGATACTCCTTTAAAGTTAAAACTGAAGACGTCGGATATGTGGGGTGAGTACGGGAAATGTCATTTGCATAGAGGTATGGCAAGGATCTCTGGTTCGAGGGAAAAATTACTGgcatgatatatatattttttttcaatcacAATGACATGTAGATTTGCTCATCTGTCTCGTTCAACGGCAGATGCTCAAGTTGGAAACCATGGAGATGTCGATTTGTTCAGTACACCAGCAACTGGCTTTACATGTTTTCCTCTTAGAGTTGAGTTGCCGCCGGAAAATACGTTGGAAATGCATTCCCAAATTGCGCATTGAGAGTATTTATGCCAGTGTTACTTTAAATTTCAAAGGAGAAAGAATGTGcgctgtgtttttttcttctcgtTTTTCCTCGTTATCCT
>TCONS_00003308
GACTATAGGATATAACAAGTTAAACGTGCCGTGTACCGCATACAGATGGCAGAAGCTTCTTTTACCGAATAACACTGCCCTCTAtgggcctctctctctctctctcgatcgcactctctctctctctcctctctatctcacacacgcacacacactgtgccttttttttctccctcttctCTCTCCGATTGTCTTACCATCGCCATCACCCTCCAATTATTCCGTCGCGTAAATTAAGACAGGGGAGAGGGCAGCGTATTGTGCAGGAAGCTCTTATTTTAAGTCCTCTCATAAATATTCCACCCTGCCCCAAATGTTACAATCGATCTGACGACAGTACAGCAACAGTGAGCCAATGGAAATCCAAGTTCCACTAGTTGAAACACTAGTTAAGATGGCAACGCATCTCCAAAGACGGATTTACGGGAACCTCTCGCCGAAAcgaaattaaaacaacaaaaatatgaacacaGACAACGCTGCATTGGAGGAAGAAGACATCAGCGAAGAAATCACATGCGCATCCGGCGAGATTCAACGCGATAGCAGCCGTACCACTCACAGGCGTCTCGGGGATGCGTACTTTGCGCGTCCGTTTTTGAGAAAAAAGGATAGACTGGCTAGCTTGTGGATACATTCCGTTTAAAATGGACATTGCAGCGGCTGGATTTTGCCGGGGAATGGCAGTGCGCATCAAGAGAAATTCCTAAACTTGCGTTTTTCCTCGTCTCAGCCTGCTGATCGTCACGTTTCCAGGGAGAGTTTGTGATACCCGGGCTGATCACGAACCACTTCACGGATTATCATACAGTCTGGTAAAAGAGGGACCGGTGTCTTCAAGGTTATGGATTGGCTGTGCTCATGATGTATTCGACTTTACCACATTTAAGCGGGTAAGGAACACGGATTGTCTTCCCAAGCAAAGCGAATCTCATTCGAAGCCCCGTATACATCCTGCTGCGGCTGGagctgtccgtggtgctgaaaCGCAGTTGGCACAGAACACAGCCTAACACATATATGTGTTTGCCTCGTGAAATATTCAGTTATGTCCGCGCTACACAACTTCGTATGTGCTTCACAGCCTTCGGGCGTTAGATTTTACATCCTCGATTATAAGGCATTGCGCGTTTCTTTGGAAAGACCGGCTTGGGTGCGCGATGAATGGGCTGTTTTTGTGTTGAATTAGTtcgtttattaaatctgtgtaatTATCAGGGCTGATGTAGACTTTTATATCGTGCTATAGCGCGTTTGATTTGTGCTGGATCTGtgaatatgtgtttgtgtgcgtctTTGTGCGTccaagtgtgtgtttatgtgggagagtggggagagaaagagagagtgtatgtgtgtgtgtgtgtgtgtgtatgtgagagagagagaggttgatTAGCATGGATACAAATGCTTCTACACAACAAAATGCTTTAATGTAATATTGTTTGCTCCCGATCAAGATGGAATCGGGGTATAATCGATGACGTCGCGTTTTGCTTTTAATCAACTCGCGTCTTTCTCGCCCGAGGGATGAGCTATGACTGTCACATTTACCGTCAAATGGAGAAATTCAACATAGGCACCTTTGTGAAACGTTGATGTGTCGTGCACTCCGTGGGTTTAACTTCGATACTCCTTTAAAGTTAAAACTGAAGACGTCGGATATGTGGGGTGAGTACGGGAAATGTCATTTGCATAGAGGTATGGCAAGGATCTCTGGTTCGAGGGAAAAATTACTGgcatgatatatatattttttttcaatcacAATGACATGTAGATTTGCTCATCTGTCTCGTTCAACGGCAGATGCTCAAGTTGGAAACCATGGAGATGTCGATTTGTTCAGTACACCAGCAACTGGCTTTACATGTTTTCCTCTTAGAGTTGAGTTGCCGCCGGAAAATACGTTGGAAATGCATTCCCAAATTGCGCATTGAGAGTATTTATGCCAGTGTTACTTTAAATTTCAAAGGAGAAAGAATGTGcgctgtgtttttttcttctcgtTTTTCCTCGTTATCCT

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003307 False 1311 lncRNA 0.45 2 3844836 3846716
TCONS_00003308 True 2029 lncRNA 0.45 1 3844836 3846864

Neighbor

gene id symbol gene type direction distance location
XLOC_000953 CABZ01113467.1 coding downstream 514401 3305549 ~ 3330435 (-)
XLOC_000952 NA coding downstream 544983 3296607 ~ 3299853 (-)
XLOC_000951 gpc5a coding downstream 549791 3100244 ~ 3295045 (-)
XLOC_000950 CU986306.1 coding downstream 1130561 2704604 ~ 2714275 (-)
XLOC_000949 NA coding downstream 1342092 2495021 ~ 2502744 (-)
XLOC_000955 NA coding upstream 182905 4029769 ~ 4074148 (-)
XLOC_000956 NA coding upstream 237314 4084178 ~ 4250442 (-)
XLOC_000957 FP009765.2 coding upstream 363634 4210498 ~ 4210652 (-)
XLOC_000958 NA coding upstream 936921 4783785 ~ 4785460 (-)
XLOC_000959 FQ790365.1 coding upstream 1231507 5078371 ~ 5078488 (-)
XLOC_000945 NA non-coding downstream 1593800 2239211 ~ 2251036 (-)

Expression


Co-expression Network