XLOC_009545


Basic Information

Item Value
gene id XLOC_009545
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45558167 ~ 45560856 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019259
TTGAactttgaccaatcagagaaaacAACACTGAAACCGTTTCTACTGAtgacatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatagacAAACCTGGTTAATCATTCACATTTAACAGGGAGCAAAGTCTCATCTGAAAcccagaaaataaacaaaacgcAAGCAGAAGACATTAAACAGGCtaacagcaaataaaacaaagccACGCGCCTGCTCATTTCTGATTAGACAactttaaataatcattttattctTGAATGACAATTACAGACTATATTAATCATACACATTCTGTACATGTTGTCGTTTCGTGTTCACTCAGATGTACAGCAGTCGCTGTGGTGGGAGTTGAAGCTCCGCCTCTTAACCACATTTGCTTTTTTGCCAAGTGGGTGAAACTTACTGGATTCAAATTTAACCTTGGGGGTGgagcttattttattcaaatttaaaCCTTGGTGGGCAGAACtgactttatttaaatataaatttggtAGGCGGAGCTCATTTGATTAAAATTTAACCTTGGGGTTTAAGCTCATTTTGTTTAAATCTAACCTTGATTGGAGGAgctcaatttatttaaattaaatattgtggTGGAGctcaatttatttaaacaaaactttAGGGGTGGAGctcattttgtttacATTTAAACTCGGGGGCAGGGCATTACCACACCACAGCGATAGTGAAAACACATCAGTGCAGGAATATCTGTGTCCTTTTTATCTCCTCCAGTCACCTGCTCGGTTTCTTTCCATCATGCACTGCTCTAAATGGAGCCGTTGCTGCCACCTCCTGGTCCTCGTGATCTGAAGTCATGCCACAGTTTCACCAGCGGCTCTCGGTTCTTCCAGATGAGCTCATGCCCATATATGATGTACCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019259 True 902 lncRNA 0.40 2 45558167 45560856

Neighbor

gene id symbol gene type direction distance location
XLOC_009544 MB21D2 coding downstream 19394 45527281 ~ 45538773 (-)
XLOC_009543 fgf12b coding downstream 47190 45414883 ~ 45510977 (-)
XLOC_009542 NA coding downstream 151118 45365247 ~ 45407049 (-)
XLOC_009541 CABZ01068246.1 coding downstream 201532 45338623 ~ 45356635 (-)
XLOC_009540 CABZ01068244.1 coding downstream 237694 45311936 ~ 45320473 (-)
XLOC_009546 CABZ01067232.1 coding upstream 107995 45668851 ~ 45674213 (-)
XLOC_009547 NA coding upstream 215337 45776193 ~ 45861721 (-)
XLOC_009548 NA coding upstream 650127 46210983 ~ 46213819 (-)
XLOC_009549 NA coding upstream 696689 46257545 ~ 46268918 (-)
XLOC_009550 NA coding upstream 729416 46290272 ~ 46293726 (-)
XLOC_009539 NA non-coding downstream 245128 45300527 ~ 45313039 (-)
XLOC_009538 NA non-coding downstream 366052 45191684 ~ 45192115 (-)
XLOC_009536 CABZ01037147.1 non-coding downstream 807537 44750514 ~ 44750630 (-)
XLOC_009530 NA non-coding downstream 1164393 44370567 ~ 44393774 (-)
XLOC_009551 NA non-coding upstream 769635 46330491 ~ 46331099 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000147_00640227_00645612 NA coding CI01000147 null 640227 ~ 647176 (+)