XLOC_009547


Basic Information

Item Value
gene id XLOC_009547
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 45776193 ~ 45861721 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019260
CGCGCACTACAGACAGAGCAGTGTTGTGTGGAGCTCGCCGTGAGCGGACTGTTACCGAGCTCCTCACGGCGGAGGGAGGGACGCGCAGTCCGGATGCTCCTTCAGGACGAGTAAAGCAATACATCAGCGGCTCCAATGCGGTGCCAATTGTTTCTAATTCGGTTTCTGCGTCCGTTTCCCGCAGGATGCCGTCTGGAAAAAATGCGCATATGAATTAAACGTGGGTGGGATTGCTTCAGCGTTGGACACTGGATCTATGATAACGATTCTGCCGTAAAACGCCGAGCCGCATTTGGAAATATAAAGAATTTATCTGTATGCTGGGCTTTTCTGAGGGAGATTTCGCGCCGGTTTGAATGGACGCTTTGTCCGTTGCGTCTTTTTTCTTCTTGCCTATATCTAAACGGATTGTATCCGCATATTAAATGGTCTTATTGTCGTGTTTATACACTAAATACGACGGCTTCGTACTGTGCTTTTTTTACCTCAGTAGTGTCATGTTTCCTCTGAGGCGATCCGACGTGAGGTGAAAAGTCTGACTGGACCTCCTTCCAGAAGTGAACCATCAACATTTGTGGATTCTTCGAGAATTTCTCATCCCAACAGTGTTTTTGGAAGGGCTTCGTGTCGTTTCCTTGGATTAAATCGACTTTATTTGTGTGCTGTACGGAAAGTCTGTTTGGGATTTCCAACATCGCTTGAATCGATCGAGCCGTTTGGAATGAAAAGCCGTTAAAAACCGCCGTTGAGATTTCGCGCCACATCTGCATTTTGATGAGATTTCATCCTTCATAGCGTATTTTTGGCTTTATATACATGTTATAGAAACATATAATATCTAAGTGAGCATATTGCCAAAGGACTCAAACCCAGAGGACGTGATTTAGACATCATCTATCCGAAGATCTCGGACATTTCTGTGCTGCTCTGAACTTGGGAGGCGTTTGGATGCTCCAGGACGGAGactcaaaccccgttgtcgtggtcaactccgctctaCCTCCCAAGTCTGCCAACATATgtggcgagccactgggcaaactggtaacagaggaAAGTCATCTACAAGGAGGTAAGCAGGCATGTGGTAGCAAGAAAAGGAACAGAAGCCAGCGGTGGCTTTATACTGTcctg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019260 True 1134 lncRNA 0.47 2 45776193 45861721

Neighbor

gene id symbol gene type direction distance location
XLOC_009546 CABZ01067232.1 coding downstream 101980 45668851 ~ 45674213 (-)
XLOC_009545 NA coding downstream 215337 45558167 ~ 45560856 (-)
XLOC_009544 MB21D2 coding downstream 237420 45527281 ~ 45538773 (-)
XLOC_009543 fgf12b coding downstream 265216 45414883 ~ 45510977 (-)
XLOC_009542 NA coding downstream 369144 45365247 ~ 45407049 (-)
XLOC_009548 NA coding upstream 349262 46210983 ~ 46213819 (-)
XLOC_009549 NA coding upstream 395824 46257545 ~ 46268918 (-)
XLOC_009550 NA coding upstream 428551 46290272 ~ 46293726 (-)
XLOC_009551 NA coding upstream 468770 46330491 ~ 46331099 (-)
XLOC_009552 NA coding upstream 496529 46358250 ~ 46373939 (-)
XLOC_009539 NA non-coding downstream 463154 45300527 ~ 45313039 (-)
XLOC_009538 NA non-coding downstream 584078 45191684 ~ 45192115 (-)
XLOC_009536 CABZ01037147.1 non-coding downstream 1025563 44750514 ~ 44750630 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G358124 NA non-coding NC_048569.1 CM023223.2 1299517 ~ 1302598 (-)