Gene
RNA
| Item | Value |
|---|---|
| gene id | G205624 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000049 |
| NCBI id | null |
| chromosome length | 9665442 |
| location | 326434 ~ 326650 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU233418 | True | 217 | lncRNA | 0.49 | 1 | 326434 | 326650 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000049_00297474_00300898 | GEMIN8 | coding | downstream | 25396 | 297264 ~ 301038 (-) |
| CI01000049_00246668_00252556 | GPM6BA, GPM6BB, GPM6B | coding | downstream | 73878 | 246557 ~ 252556 (-) |
| CI01000049_00175772_00192995 | PWP2H | coding | downstream | 133318 | 175712 ~ 194107 (-) |
| CI01000049_00062863_00075679 | NA | coding | downstream | 249902 | 62696 ~ 76532 (-) |
| CI01000049_00330959_00338938 | NA | coding | upstream | 4057 | 330707 ~ 341230 (-) |
| CI01000049_00345414_00349493 | NA | coding | upstream | 18759 | 345409 ~ 349655 (-) |
| CI01000049_00375347_00377699 | NA | coding | upstream | 48386 | 375036 ~ 377831 (-) |
| CI01000049_00400682_00411259 | NA | coding | upstream | 74017 | 400667 ~ 411259 (-) |
| CI01000049_00715243_00718107 | NA | coding | upstream | 388321 | 714971 ~ 719363 (-) |
| G205607 | NA | non-coding | downstream | 67444 | 258447 ~ 258990 (-) |
| G205594 | NA | non-coding | downstream | 104539 | 221674 ~ 221895 (-) |
| G205579 | NA | non-coding | downstream | 191910 | 134303 ~ 134524 (-) |
| G205464 | NA | non-coding | downstream | 273917 | 51712 ~ 52517 (-) |
| G205626 | NA | non-coding | upstream | 2243 | 328893 ~ 329165 (-) |
| G205628 | NA | non-coding | upstream | 3106 | 329756 ~ 329978 (-) |
| G205638 | NA | non-coding | upstream | 75865 | 402515 ~ 402976 (-) |
| G205538 | NA | non-coding | upstream | 80499 | 407149 ~ 409068 (-) |
| G205517 | NA | non-coding | upstream | 93620 | 420270 ~ 425652 (-) |
| G206849 | NA | other | upstream | 304493 | 631143 ~ 631576 (-) |
| G206850 | NA | other | upstream | 306030 | 632680 ~ 633195 (-) |
| G206938 | NA | other | upstream | 499209 | 825859 ~ 827645 (-) |
| G207278 | NA | other | upstream | 1660361 | 1987011 ~ 1988767 (-) |
| G209491 | NA | other | upstream | 5701439 | 6028089 ~ 6028469 (-) |
