G205538


Basic Information

Item Value
gene id G205538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 407149 ~ 409068 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU233332
GGCTCTCTAGCGATATCCCAATTCGTCGGTCACTACTGACGTACGTCTCCGTTCCCTCCTTCATGGAACGAGGGTTACATATGTAACCGAGACGTTTTTTTTCCTGACTTTTTTTTCTAAGGAGAATTATTTTTCATCCAGGGCTTTTTGTGGGCCTTAACATGCTCAAAAACTCTTGAAAATTGGCACACACGCCGCAAAGGATGGGACCCGGGCGTGGCGGGGGCTCGACAGTGCCCCCTTGAATGGTGTCCGAAAACTTGGTCCGTATATCAAACATGCTTGCATGTATTTGTATGAAACTCGGTACACATAGACCTCATCGGGCCTAACAACTTTCATGCTCTAAGTTATACGCCAGCTCAACAGGAAGTCAGCTATTATGGGTTGTTTGAAAATCGCATGCTCTGGAATTTGATATACTCCTCCTAGGCGATTAATCCGATCACTACCAAACTCGGTCAGAATGAAGTCAAGACATTGAGGATGTAAAATTGTGAGCGGATTTTTGATATCTCAAACGGTTTGGCTGTGGCGAGGCAACAAATTTATGGCGAGAAAAGGGAAACAGGAAATATGTTATAACCTCTGCATACATTGATTGATTTTTTTGAAACTTCAGTTGTGTGTTTATTTTAGGAGGCTGATCACATGGATGTGACTATTGTGAGTCAAAGTTATAGCGCCACCAACTGGCAGCAGGAAGTGTGTTACTTTCAAAATGCTTTAAGATCACCCTCTAATTTTTTTACCCAATTTGCTTCAAACTTCATTAGAATAATGTCAAGACATAACAAATGTAGACCTGTAAAAAGATTTTTGATATTTTTCAAACACTGTTGCCATAGCAACAGATCAAACTTCAATATTTGTTTTGGATTGGGTTTGAGACACTTAGCATGCTTCAAATTGCATGAAACTTGATTCATATGTCAGGACTGACATCCAGTAGACATGGGCAAAGCCTCAGAAACAGGCAGGAAGGAGGGCCTCTTTAGCGCCACCTTTTGAAAAAAGTGAGGGGTTTAACCTACAGTCACCAAACTTGGTACACATATTGCTCTCATTAAGCTGGACAACTTTCTAATTTACAGTCATTAGCTCTGACCAACAGGAAGTCCGATATTTTGGTTTGAATGAGGATTTTTTCACCCTCTCTCTCTCTCTCCCTCTCTCTGTGTTACAGAGAGAGTGATGGTTACATGTTTCTGTGATGGGTAGGTTTAGGAGTAGGGGTTGGGTTAGGTGATAGAAAATATCATTGACCTGATGTAAAATCAATGGAAGTCTATGCAATGTCCTCACTAAGATAACAATACAAACCTGTGTGAGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTTTACCCATTTTTTGATGAACTTATAGAAATATTGAACTGCAAATGATAACTTCACACTCATTTGAAATTGAACCATGACATTATATCACTATTTGGACAGGACTACTTTTCAAATGTCATTTGAGTTACAATTATTATTACCAACACCTGTGATTTCATGTTCTGATTCATACAAGACTTAAATCTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTACAGAGGAGAGTGTGTGTTATCTAGACATGGGTGTTATAGAAAGTCATGTGCTGTGTTTGCATCATGTACAACGCATGTCTTTAAATTAACTATTTATTGATATAATTCAAATTTATTAAAAATACCTATTTTAGTAAATTTCACTTGATTTTATAAAAGTGGCTGTTTAAAATAAACTCGCATAAGTGAGCAGAAAAATGTAGACATGTACCTTATTATTACCTGAGACTGATATTAAAATCGTCTTTGCAGGTTCTGTGATTTGGCTCTATTTATTTTATTTTATTTTTTTCATCGTATACCACACATATTGAAATTAAATGAAAGCATGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233332 True 1920 lncRNA 0.38 1 407149 409068

Neighbor

gene id symbol gene type direction distance location
CI01000049_00375347_00377699 NA coding downstream 29318 375036 ~ 377831 (-)
CI01000049_00345414_00349493 NA coding downstream 57494 345409 ~ 349655 (-)
CI01000049_00330959_00338938 NA coding downstream 65919 330707 ~ 341230 (-)
CI01000049_00297474_00300898 GEMIN8 coding downstream 106111 297264 ~ 301038 (-)
CI01000049_00246668_00252556 GPM6BA, GPM6BB, GPM6B coding downstream 154593 246557 ~ 252556 (-)
CI01000049_00715243_00718107 NA coding upstream 305903 714971 ~ 719363 (-)
CI01000049_00720262_00721411 NA coding upstream 311186 720254 ~ 721411 (-)
CI01000049_00732479_00766646 NA coding upstream 323411 732479 ~ 766646 (-)
CI01000049_00769434_00772846 NA coding upstream 360112 769180 ~ 772846 (-)
CI01000049_00841319_00845716 SPP2 coding upstream 430655 839723 ~ 845716 (-)
G205638 NA non-coding downstream 4173 402515 ~ 402976 (-)
G205628 NA non-coding downstream 77171 329756 ~ 329978 (-)
G205626 NA non-coding downstream 77984 328893 ~ 329165 (-)
G205624 NA non-coding downstream 80499 326434 ~ 326650 (-)
G205607 NA non-coding downstream 148159 258447 ~ 258990 (-)
G205517 NA non-coding upstream 11202 420270 ~ 425652 (-)
G205641 NA non-coding upstream 17802 426870 ~ 427081 (-)
G205653 NA non-coding upstream 29734 438802 ~ 439112 (-)
G205650 NA non-coding upstream 30268 439336 ~ 458587 (-)
G205658 NA non-coding upstream 52920 461988 ~ 462290 (-)
G206849 NA other upstream 222075 631143 ~ 631576 (-)
G206850 NA other upstream 223612 632680 ~ 633195 (-)
G206938 NA other upstream 416791 825859 ~ 827645 (-)
G207278 NA other upstream 1577943 1987011 ~ 1988767 (-)
G209491 NA other upstream 5619021 6028089 ~ 6028469 (-)

Expression


Co-expression Network