Gene
RNA
| Item | Value |
|---|---|
| gene id | G206978 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000049 |
| NCBI id | null |
| chromosome length | 9665442 |
| location | 861202 ~ 861519 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU234878 | True | 318 | lncRNA | 0.47 | 1 | 861202 | 861519 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000049_00848509_00854128 | ALG11 | coding | downstream | 7074 | 847658 ~ 854128 (-) |
| CI01000049_00841319_00845716 | SPP2 | coding | downstream | 15486 | 839723 ~ 845716 (-) |
| CI01000049_00769434_00772846 | NA | coding | downstream | 88356 | 769180 ~ 772846 (-) |
| CI01000049_00732479_00766646 | NA | coding | downstream | 94556 | 732479 ~ 766646 (-) |
| CI01000049_00720262_00721411 | NA | coding | downstream | 139791 | 720254 ~ 721411 (-) |
| CI01000049_00980509_01030584 | NA | coding | upstream | 118847 | 980366 ~ 1030597 (-) |
| CI01000049_01197359_01206811 | NA | coding | upstream | 334159 | 1195678 ~ 1207195 (-) |
| CI01000049_01247902_01262425 | IGF2BP2, IGF2BP2B | coding | upstream | 385941 | 1247460 ~ 1262425 (-) |
| CI01000049_01302622_01311542 | UBAC2 | coding | upstream | 441092 | 1302611 ~ 1311700 (-) |
| CI01000049_01340906_01399870 | DACH1, DACHC | coding | upstream | 479387 | 1340906 ~ 1399870 (-) |
| G206916 | NA | non-coding | downstream | 1320 | 857432 ~ 859882 (-) |
| G206975 | NA | non-coding | downstream | 26088 | 834821 ~ 835114 (-) |
| G206974 | NA | non-coding | downstream | 26999 | 833981 ~ 834203 (-) |
| G206973 | NA | non-coding | downstream | 28335 | 832320 ~ 832867 (-) |
| G206972 | NA | non-coding | downstream | 30727 | 830190 ~ 830475 (-) |
| G206931 | NA | non-coding | upstream | 4491 | 866010 ~ 867379 (-) |
| G206987 | NA | non-coding | upstream | 45940 | 907459 ~ 907768 (-) |
| G206991 | NA | non-coding | upstream | 53354 | 914873 ~ 915141 (-) |
| G206997 | NA | non-coding | upstream | 60608 | 922127 ~ 922409 (-) |
| G206932 | NA | non-coding | upstream | 189113 | 1050632 ~ 1050992 (-) |
| G206938 | NA | other | downstream | 33557 | 825859 ~ 827645 (-) |
| G206850 | NA | other | downstream | 228007 | 632680 ~ 633195 (-) |
| G206849 | NA | other | downstream | 229626 | 631143 ~ 631576 (-) |
| G207278 | NA | other | upstream | 1125492 | 1987011 ~ 1988767 (-) |
| G209491 | NA | other | upstream | 5166570 | 6028089 ~ 6028469 (-) |
| CI01000049_08056071_08059039 | TIMM10.S, TIMM10, TIMM10.L | other | upstream | 7194114 | 8055633 ~ 8059179 (-) |
| CI01000049_08452153_08453389 | CISD2 | other | upstream | 7589623 | 8451142 ~ 8454233 (-) |
| G211175 | NA | other | upstream | 7603774 | 8465293 ~ 8476265 (-) |
