XLOC_009559 (CR381579.1)


Basic Information

Item Value
gene id XLOC_009559
gene name CR381579.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 46744442 ~ 46745262 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018713
acacatacaagctttccggaaaattgccggcaattttgcgttaaaggtctgtatgtgtgaaagggggtAGAATCTCTATGtatctcaggccccgtttacactagtgcgttttagttttaaaacggcgttttagatcaaaaacgatccgcgtccacactagcgtttctgaacatatctccgtccacactacgccacaaaaccgtatatcacgtgaccattcgcgcactctgggcatgcacgtattttgtggacagacgacgaggtcgagttgttactaaacgtaacgaataactgcacaatggcgcctaaaacagacactagtgcaaacaacgctcccatttctgtgcccatgttgttgtttacagtgaaggctggtctgctgtcttccgctagcgttaaagccatgtgttttagtcatgtgataggggcttgagaataagggaaggatacgcaatgataCAAAAGCctcaatcaggtagcgaatctcagcagccccgcctccgtttccaGATGTCTCcctttcccccatccacactgagatggagcagcagcatttcagaatgaaaacagcctctccagcgtttccaaaatgctccgttttcagTGTTCGTAAactccggtgtagtgtggacggatggtgtaaccTTAGCCAAacatatgcgttttaaaacgaaaacacattagtgtaaacggggtctcAGTATCTCTATGTGTTTA

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0140058 neuron projection arborization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0006811 ion transport biological_process
GO:0097060 synaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097171

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018713 True 717 lncRNA 0.46 2 46744442 46745262

Neighbor

gene id symbol gene type direction distance location
XLOC_009557 ilkap coding downstream 8010 46722510 ~ 46736432 (-)
XLOC_009556 zgc:162872 coding downstream 25647 46685434 ~ 46718795 (-)
XLOC_009555 CABZ01044053.1 coding downstream 71281 46633275 ~ 46673161 (-)
XLOC_009554 NA coding downstream 144781 46598799 ~ 46599661 (-)
XLOC_009553 NA coding downstream 365560 46372649 ~ 46378882 (-)
XLOC_009560 chrd coding upstream 45414 46790676 ~ 46828958 (-)
XLOC_009561 NA coding upstream 94634 46839896 ~ 46848663 (-)
XLOC_009562 NA coding upstream 333593 47078855 ~ 47079410 (-)
XLOC_009563 NA coding upstream 347361 47092623 ~ 47094230 (-)
XLOC_009564 CABZ01079080.1 coding upstream 355130 47100392 ~ 47107557 (-)
XLOC_009552 NA non-coding downstream 370503 46358250 ~ 46373939 (-)
XLOC_009551 NA non-coding downstream 413343 46330491 ~ 46331099 (-)
XLOC_009550 NA non-coding downstream 450716 46290272 ~ 46293726 (-)
XLOC_009567 NA non-coding upstream 469874 47215136 ~ 47218470 (-)
XLOC_009568 NA non-coding upstream 474395 47219657 ~ 47221114 (-)

Expression


Co-expression Network