Gene
RNA
| Item | Value |
|---|---|
| gene id | G207655 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000049 |
| NCBI id | null |
| chromosome length | 9665442 |
| location | 3046605 ~ 3046831 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU235635 | True | 227 | lncRNA | 0.41 | 1 | 3046605 | 3046831 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000049_02876185_02882477 | NA | coding | downstream | 163749 | 2875428 ~ 2882856 (-) |
| CI01000049_02519296_02524006 | NA | coding | downstream | 522599 | 2519077 ~ 2524006 (-) |
| CI01000049_02331749_02338716 | NA | coding | downstream | 707882 | 2331296 ~ 2338723 (-) |
| CI01000049_02107910_02122886 | PNPLA4 | coding | downstream | 922319 | 2107736 ~ 2124286 (-) |
| CI01000049_01971492_01983341 | NA | coding | downstream | 1062687 | 1971291 ~ 1984030 (-) |
| CI01000049_03081339_03089363 | NA | coding | upstream | 34178 | 3081009 ~ 3089363 (-) |
| CI01000049_03093994_03098141 | NA | coding | upstream | 47006 | 3093837 ~ 3098141 (-) |
| CI01000049_03204366_03212170 | CREB1, CREB1B, CREB1A | coding | upstream | 157060 | 3203891 ~ 3212506 (-) |
| CI01000049_03256991_03257622 | CLDNG | coding | upstream | 210024 | 3256855 ~ 3257622 (-) |
| CI01000049_03667851_03702669 | NA | coding | upstream | 621020 | 3667851 ~ 3702669 (-) |
| G207590 | NA | non-coding | downstream | 294806 | 2751471 ~ 2751799 (-) |
| G207548 | NA | non-coding | downstream | 386893 | 2655915 ~ 2659712 (-) |
| G207504 | NA | non-coding | downstream | 536074 | 2510053 ~ 2510531 (-) |
| G207499 | NA | non-coding | downstream | 550674 | 2495731 ~ 2495931 (-) |
| G207493 | NA | non-coding | downstream | 559613 | 2486785 ~ 2486992 (-) |
| G207577 | NA | non-coding | upstream | 67328 | 3114159 ~ 3114981 (-) |
| G207669 | NA | non-coding | upstream | 158811 | 3205642 ~ 3223982 (-) |
| G207740 | NA | non-coding | upstream | 215504 | 3262335 ~ 3262612 (-) |
| G207742 | NA | non-coding | upstream | 219439 | 3266270 ~ 3266944 (-) |
| G207743 | NA | non-coding | upstream | 220783 | 3267614 ~ 3267866 (-) |
| G207278 | NA | other | downstream | 1057838 | 1987011 ~ 1988767 (-) |
| G206938 | NA | other | downstream | 2218960 | 825859 ~ 827645 (-) |
| G206850 | NA | other | downstream | 2413410 | 632680 ~ 633195 (-) |
| G206849 | NA | other | downstream | 2415029 | 631143 ~ 631576 (-) |
| G209491 | NA | other | upstream | 2981258 | 6028089 ~ 6028469 (-) |
| CI01000049_08056071_08059039 | TIMM10.S, TIMM10, TIMM10.L | other | upstream | 5008802 | 8055633 ~ 8059179 (-) |
| CI01000049_08452153_08453389 | CISD2 | other | upstream | 5404311 | 8451142 ~ 8454233 (-) |
| G211175 | NA | other | upstream | 5418462 | 8465293 ~ 8476265 (-) |
