Gene
RNA
| Item | Value |
|---|---|
| gene id | G206659 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000049 |
| NCBI id | null |
| chromosome length | 9665442 |
| location | 3103635 ~ 3105339 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU234527 | True | 1685 | lncRNA | 0.37 | 2 | 3103635 | 3105339 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000049_03064154_03077534 | NA | coding | upstream | 25638 | 3064154 ~ 3077997 (+) |
| CI01000049_02997869_03042673 | PRKX | coding | upstream | 60872 | 2997591 ~ 3042763 (+) |
| CI01000049_02827101_02828949 | NA | coding | upstream | 273875 | 2825830 ~ 2829760 (+) |
| CI01000049_02732074_02754633 | NA | coding | upstream | 348883 | 2731808 ~ 2754752 (+) |
| CI01000049_02593696_02606225 | NA | coding | upstream | 497365 | 2593507 ~ 2606270 (+) |
| CI01000049_03121188_03131739 | NA | coding | downstream | 15849 | 3121188 ~ 3131911 (+) |
| CI01000049_03133436_03158345 | DHRSX | coding | downstream | 27958 | 3133297 ~ 3158677 (+) |
| CI01000049_03214802_03219475 | CHMP2B.L, CHMP2BA, CHMP2BB, CHM2B, CHMP2B, CHMP2B.S | coding | downstream | 109185 | 3214524 ~ 3219586 (+) |
| CI01000049_03247914_03248937 | NA | coding | downstream | 142575 | 3247914 ~ 3249051 (+) |
| CI01000049_03253972_03255119 | HTR1FB, HTR1F | coding | downstream | 148633 | 3253972 ~ 3255140 (+) |
| G206656 | NA | non-coding | upstream | 17498 | 3084546 ~ 3086137 (+) |
| G206654 | NA | non-coding | upstream | 22192 | 3080980 ~ 3081443 (+) |
| G206723 | NA | non-coding | upstream | 41431 | 3061979 ~ 3062204 (+) |
| G206721 | NA | non-coding | upstream | 42905 | 3060442 ~ 3060730 (+) |
| G206696 | NA | non-coding | upstream | 110529 | 2932480 ~ 2993106 (+) |
| G206658 | NA | non-coding | downstream | 198461 | 3303800 ~ 3304088 (+) |
| G206787 | NA | non-coding | downstream | 208146 | 3313485 ~ 3313916 (+) |
| G206788 | NA | non-coding | downstream | 217391 | 3322730 ~ 3323199 (+) |
| G206789 | NA | non-coding | downstream | 218227 | 3323566 ~ 3323905 (+) |
| G206805 | NA | non-coding | downstream | 232240 | 3337579 ~ 3338144 (+) |
| CI01000049_01840330_01843844 | FGF8B | other | upstream | 1259807 | 1839815 ~ 1844077 (+) |
| G207888 | NA | other | downstream | 518663 | 3624002 ~ 3624311 (+) |
| G208074 | NA | other | downstream | 772057 | 3877396 ~ 3882211 (+) |
| CI01000049_04473766_04475768 | GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 | other | downstream | 1368186 | 4473662 ~ 4476270 (+) |
| G209660 | NA | other | downstream | 3772794 | 6878133 ~ 6882030 (+) |
| CI01000049_07219171_07224229 | NA | other | downstream | 4113509 | 7218811 ~ 7224268 (+) |
