G206788


Basic Information

Item Value
gene id G206788
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3322730 ~ 3323199 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU234668
CATCGAGGGCGCATAGTGGCCGCAAAGGGGGCGCTCGCGAGCACCCTTCTGAAACCTAAAATGATGAATGGGACACCCTACAGTCTCGTGGACTTAACGGACACGTGCATGCGGCAGCCATTGTAAGTCCACAAGACCGAAAGTGCATAGAAGTGTGCCATTTGGGATACAGCCTTTCTCTCAAGTTCGTAGCGCGGACCCAGGACTGGAGTCACGTCCAGTGCGCCCAATCTCATTTCGTGGCCTAACAAAATAAAATATACAGTAGCAATTTTGCACTGTTTCATAAACCTTATTTTTCTTTTTTTTTTATTTATTATTATTTAAATGTATTACCATTTTAACGTCGCAGCTCAAAAATGAGTCCTTATCCCACTGGCAAATGCGATTTCTGACCATTGATGTGTATATGACTCAGAATGGAGTTTTATAACTCAGTTGAAGGCTGCAGAGGTCAAGTTTATTTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU234668 True 470 lncRNA 0.43 1 3322730 3323199

Neighbor

gene id symbol gene type direction distance location
CI01000049_03292042_03304890 NA coding upstream 17629 3292042 ~ 3305101 (+)
CI01000049_03279568_03285640 ARL13B coding upstream 36545 3279568 ~ 3286185 (+)
CI01000049_03259617_03273490 NA coding upstream 48139 3259174 ~ 3274591 (+)
CI01000049_03253972_03255119 HTR1FB, HTR1F coding upstream 67590 3253972 ~ 3255140 (+)
CI01000049_03247914_03248937 NA coding upstream 73679 3247914 ~ 3249051 (+)
CI01000049_03475307_03572415 EPHA6 coding downstream 152108 3475307 ~ 3572415 (+)
CI01000049_03584412_03585910 ARL6 coding downstream 258833 3582032 ~ 3586099 (+)
CI01000049_03593799_03605097 SLC5A7 coding downstream 270528 3593727 ~ 3606491 (+)
CI01000049_03631096_03632219 KCTD12.2 coding downstream 306178 3629377 ~ 3632370 (+)
CI01000049_03756695_03758838 KLF12 coding downstream 433224 3756423 ~ 3759295 (+)
G206787 NA non-coding upstream 8814 3313485 ~ 3313916 (+)
G206658 NA non-coding upstream 18642 3303800 ~ 3304088 (+)
G206659 NA non-coding upstream 217391 3103635 ~ 3105339 (+)
G206656 NA non-coding upstream 236593 3084546 ~ 3086137 (+)
G206654 NA non-coding upstream 241287 3080980 ~ 3081443 (+)
G206789 NA non-coding downstream 367 3323566 ~ 3323905 (+)
G206805 NA non-coding downstream 14380 3337579 ~ 3338144 (+)
G206806 NA non-coding downstream 14982 3338181 ~ 3338381 (+)
G206816 NA non-coding downstream 28876 3352075 ~ 3352993 (+)
G206823 NA non-coding downstream 37870 3361069 ~ 3361534 (+)
CI01000049_01840330_01843844 FGF8B other upstream 1478902 1839815 ~ 1844077 (+)
G207888 NA other downstream 300803 3624002 ~ 3624311 (+)
G208074 NA other downstream 554197 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 1150326 4473662 ~ 4476270 (+)
G209660 NA other downstream 3554934 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3895649 7218811 ~ 7224268 (+)

Expression


Co-expression Network