Item | Value |
---|---|
gene id | G207980 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000049 |
NCBI id | null |
chromosome length | 9665442 |
location | 3631059 ~ 3632808 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
description |
---|
unnamed protein product |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU235986 | False | 1555 | lncRNA | 0.44 | 1 | 3631059 | 3632613 |
TU235988 | False | 1750 | lncRNA | 0.45 | 1 | 3631059 | 3632808 |
TU235989 | False | 1297 | lncRNA | 0.47 | 1 | 3631059 | 3632355 |
TU235990 | False | 1651 | lncRNA | 0.44 | 1 | 3631059 | 3632709 |
TU235991 | False | 1401 | lncRNA | 0.45 | 1 | 3631059 | 3632459 |
TU235987 | False | 1207 | lncRNA | 0.46 | 1 | 3631149 | 3632355 |
TU235992 | True | 1311 | lncRNA | 0.45 | 1 | 3631149 | 3632459 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000049_03256991_03257622 | CLDNG | coding | downstream | 373437 | 3256855 ~ 3257622 (-) |
CI01000049_03204366_03212170 | CREB1, CREB1B, CREB1A | coding | downstream | 418553 | 3203891 ~ 3212506 (-) |
CI01000049_03093994_03098141 | NA | coding | downstream | 532918 | 3093837 ~ 3098141 (-) |
CI01000049_03081339_03089363 | NA | coding | downstream | 541696 | 3081009 ~ 3089363 (-) |
CI01000049_02876185_02882477 | NA | coding | downstream | 748203 | 2875428 ~ 2882856 (-) |
CI01000049_03667851_03702669 | NA | coding | upstream | 35043 | 3667851 ~ 3702669 (-) |
CI01000049_03749311_03749697 | NA | coding | upstream | 115281 | 3748089 ~ 3752045 (-) |
CI01000049_03782311_03782489 | KLF5 | coding | upstream | 148603 | 3781411 ~ 3782489 (-) |
CI01000049_03790418_03842410 | PIBF1 | coding | upstream | 157178 | 3789986 ~ 3842605 (-) |
CI01000049_03864331_03867898 | TPT1 | coding | upstream | 231201 | 3864009 ~ 3867967 (-) |
G207974 | NA | non-coding | downstream | 17070 | 3613760 ~ 3613989 (-) |
G207969 | NA | non-coding | downstream | 21862 | 3608848 ~ 3609197 (-) |
G207946 | NA | non-coding | downstream | 53579 | 3577242 ~ 3577480 (-) |
G207945 | NA | non-coding | downstream | 53887 | 3576949 ~ 3577172 (-) |
G207917 | NA | non-coding | downstream | 54534 | 3575016 ~ 3576525 (-) |
G207990 | NA | non-coding | upstream | 8333 | 3641141 ~ 3641551 (-) |
G208246 | NA | non-coding | upstream | 9191 | 3641999 ~ 3676804 (-) |
G208287 | NA | non-coding | upstream | 124095 | 3756903 ~ 3760056 (-) |
CI01000049_03901904_03904746 | NA | non-coding | upstream | 266795 | 3899710 ~ 3905482 (-) |
G208332 | NA | non-coding | upstream | 306788 | 3939596 ~ 3939797 (-) |
G207278 | NA | other | downstream | 1642292 | 1987011 ~ 1988767 (-) |
G206938 | NA | other | downstream | 2803414 | 825859 ~ 827645 (-) |
G206850 | NA | other | downstream | 2997864 | 632680 ~ 633195 (-) |
G206849 | NA | other | downstream | 2999483 | 631143 ~ 631576 (-) |
G209491 | NA | other | upstream | 2395281 | 6028089 ~ 6028469 (-) |
CI01000049_08056071_08059039 | TIMM10.S, TIMM10, TIMM10.L | other | upstream | 4422825 | 8055633 ~ 8059179 (-) |
CI01000049_08452153_08453389 | CISD2 | other | upstream | 4818334 | 8451142 ~ 8454233 (-) |
G211175 | NA | other | upstream | 4832485 | 8465293 ~ 8476265 (-) |