G208246


Basic Information

Item Value
gene id G208246
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3641999 ~ 3676804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU236283
TTTAAAGGTGCAGTATGTAAGAATTCTGTCCGCTAGAGGTCGTTAGAGGCCTATTCAAAACAAAGGCGTAGCTTGATGACGCCAAGTTTGAGTGCGGAATCTTGGGACATGTGGTCTTCATCTCAACGGACGGTGCGAAAGAATAGGAATAGGACTCGGGAAGAAATCATGTTCATGGATGCGATTATTAACGTTATTGTATTTGTATTGTTATACAGTGGGTACGGAAAGTATTCAGACCCCCTTACATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAAAATCATTTAAGTTCATTTTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTTGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGCTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACAGAGTTGTTGTGAATCCACTCCTTCATTATTTTAGCTGTGTGCTTAGGGTCATTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU236283 True 725 lncRNA 0.40 3 3641999 3676804

Neighbor

gene id symbol gene type direction distance location
CI01000049_03256991_03257622 CLDNG coding downstream 384377 3256855 ~ 3257622 (-)
CI01000049_03204366_03212170 CREB1, CREB1B, CREB1A coding downstream 429493 3203891 ~ 3212506 (-)
CI01000049_03093994_03098141 NA coding downstream 543858 3093837 ~ 3098141 (-)
CI01000049_03081339_03089363 NA coding downstream 552636 3081009 ~ 3089363 (-)
CI01000049_02876185_02882477 NA coding downstream 759143 2875428 ~ 2882856 (-)
CI01000049_03749311_03749697 NA coding upstream 71285 3748089 ~ 3752045 (-)
CI01000049_03782311_03782489 KLF5 coding upstream 104607 3781411 ~ 3782489 (-)
CI01000049_03790418_03842410 PIBF1 coding upstream 113182 3789986 ~ 3842605 (-)
CI01000049_03864331_03867898 TPT1 coding upstream 187205 3864009 ~ 3867967 (-)
CI01000049_03889930_03891510 NA coding upstream 212933 3889737 ~ 3891704 (-)
G207990 NA non-coding downstream 448 3641141 ~ 3641551 (-)
G207980 NA non-coding downstream 9191 3631059 ~ 3632808 (-)
G207974 NA non-coding downstream 28010 3613760 ~ 3613989 (-)
G207969 NA non-coding downstream 32802 3608848 ~ 3609197 (-)
G207946 NA non-coding downstream 64519 3577242 ~ 3577480 (-)
G208287 NA non-coding upstream 80099 3756903 ~ 3760056 (-)
CI01000049_03901904_03904746 NA non-coding upstream 222799 3899710 ~ 3905482 (-)
G208332 NA non-coding upstream 262792 3939596 ~ 3939797 (-)
G208413 NA non-coding upstream 487032 4163836 ~ 4164051 (-)
G208414 NA non-coding upstream 553067 4229871 ~ 4259908 (-)
G207278 NA other downstream 1653232 1987011 ~ 1988767 (-)
G206938 NA other downstream 2814354 825859 ~ 827645 (-)
G206850 NA other downstream 3008804 632680 ~ 633195 (-)
G206849 NA other downstream 3010423 631143 ~ 631576 (-)
G209491 NA other upstream 2351285 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 4378829 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 4774338 8451142 ~ 8454233 (-)
G211175 NA other upstream 4788489 8465293 ~ 8476265 (-)

Expression


Co-expression Network