Fish Transcriptome and Expression Database

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model fish

XLOC_000957 (FP009765.2)

Basic Information

Item	Value
gene id	XLOC_000957
gene name	FP009765.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	4210498 ~ 4210652 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001521
AACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAACTTATGTGAATTGCAGGACACACATTGATCATCGACCTTTCGAACGCACATTGCGGCCCCGGGTCCATCCCGGGGCTACTCAGCTGACATGAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000104115

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00001521	True	155	rRNA	0.54	1	4210498	4210652

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000955	NA	coding	downstream	136350	4029769 ~ 4074148 (-)
XLOC_000954	NA	coding	downstream	363634	3844836 ~ 3846864 (-)
XLOC_000953	CABZ01113467.1	coding	downstream	880063	3305549 ~ 3330435 (-)
XLOC_000952	NA	coding	downstream	910645	3296607 ~ 3299853 (-)
XLOC_000951	gpc5a	coding	downstream	915453	3100244 ~ 3295045 (-)
XLOC_000958	NA	coding	upstream	573133	4783785 ~ 4785460 (-)
XLOC_000959	FQ790365.1	coding	upstream	867719	5078371 ~ 5078488 (-)
XLOC_000960	NA	coding	upstream	937941	5148593 ~ 5153828 (-)
XLOC_000961	NA	coding	upstream	984426	5195078 ~ 5196721 (-)
XLOC_000962	NA	coding	upstream	1140220	5350872 ~ 5352442 (-)
XLOC_000950	CU986306.1	non-coding	downstream	1496223	2704604 ~ 2714275 (-)

Expression

Co-expression Network