XLOC_000958


Basic Information

Item Value
gene id XLOC_000958
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4783785 ~ 4785460 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002903
aaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGA
>TCONS_00002904
aaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGA
>TCONS_00002905
aaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGctcataggaactccaatcttcccaactgtgagagggccttgctccagtga

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002903 False 270 lncRNA 0.37 2 4783785 4785460
TCONS_00002904 False 273 lncRNA 0.37 2 4783864 4785460
TCONS_00002905 True 309 lncRNA 0.39 2 4784735 4785460

Neighbor

gene id symbol gene type direction distance location
XLOC_000956 NA coding downstream 533343 4084178 ~ 4250442 (-)
XLOC_000957 FP009765.2 coding downstream 573133 4210498 ~ 4210652 (-)
XLOC_000955 NA coding downstream 709637 4029769 ~ 4074148 (-)
XLOC_000954 NA coding downstream 936921 3844836 ~ 3846864 (-)
XLOC_000953 CABZ01113467.1 coding downstream 1453350 3305549 ~ 3330435 (-)
XLOC_000959 FQ790365.1 coding upstream 292911 5078371 ~ 5078488 (-)
XLOC_000960 NA coding upstream 363133 5148593 ~ 5153828 (-)
XLOC_000961 NA coding upstream 409618 5195078 ~ 5196721 (-)
XLOC_000962 NA coding upstream 565412 5350872 ~ 5352442 (-)
XLOC_000963 ndfip2 coding upstream 569029 5354489 ~ 5394791 (-)
XLOC_000968 NA non-coding upstream 1274566 6060026 ~ 6085752 (-)

Expression


Co-expression Network