XLOC_009596


Basic Information

Item Value
gene id XLOC_009596
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 186574 ~ 190975 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021858
CCAAGTAATGTTACTGTCACATTCTAAGACTAAAAAttgtaaatgtcattaaaatagcTTGACTCCAAATGTCCAAAGACTCGTGTGCACTGAACACAAATCTCAGTGTTGTGGTATGACACAGTGCTGTGCTGATGGAGACGTATGTTCACATATTAAAGGAAACCCTGAAGAAAACAACCAACCAGCCTCATTCTAGAGCAAATATGAAGCAGCGCGGTGAATCAGCCTGAATATTCCCCAGCTCTTTGCATTTTTGTGTCTCATCAGGTCATTCATTCAGCAGTGCGGGGTGTAATAAACACGCTTCACCTCAGGGCTTTGGCAAAATGAAAAATACCTGATGCTCAGGCCAATGCTTTGGCTGGAAAATACAGAAATTGGCAGAGCAATCATTCTTGCGGCTTCACAAGAGCCCGGCGGCGTCTCTTCAAACAGCGCTTGTTTAAGTGCGTCTGTAGTGGAGTTAGAGGTTTATTTCCCTGAGATACTGACTGGAACTTCCACTTTAGTCCTGATAAACCATCAGCCAGACTGTTTACTAACTCATCCCAAGCTGATTTCAGAAGCACACTTATTGAGCTGAAGATCTGAGCCGCATGAATAGGAGACTCCTAATAGGTTTTCAAGATGCCACAGTCTCAATAGAGGGAATGCCAACAATCCCTTCCCATTCTaggagaaataaataaaagtgaatgggaatgcaatctgtccatccatcagcCGCTGTTGCTGTATAATGCCGTCTGGCTCTCGTTCAATACGGAGGTGACAGAAAGCTGCAGACGGATGAGAAGCGCAGGCCTGCTGTAATATATTGGCTGGATTTGAAAGGTGCGGAGGCTCAGATAGCTGTAATATACACCCTGATATACATGTATAAAGTCTGCGGGATCACAATGGAATCAGCGCTTCTATCTGCGGCCCATGAAAAGCCTCTGAATTCCATTACTGCCTTCTGAAACGCCGCCTGCTTGCTTTGCATTACAAAGTGAGCATCCCATTCCCATGAAGGTTTATGGTTTTCCGGCGTCGAGCTGATGGAGTTAATCCTATCAAAGCGTATCGTAGTTGAGCTTAAATGAACATGTGGACAACACATCGGCTGAAGAACTCCACACAAGCTAAACTCATTCATTGAATTTGAGTGCTGAGATGCACATTGTGTTTAAGCATTTATTTTCCTGCATTTTATTGAGGTAAGATCTAGAATTAATGTTAAACTGACATGTTTGATATAGTTACTGTAACTCGTAAGTTTAGTGGTGGACGGTGGAGCTGCTTTTATTTTCGTGAATGGTGTTTTTTATTGGCTTTGGAGAAGCAGAGTTGGATCAACTCACTGTCATTAATGTACACCAATGCAAACTGGAAAGTCTTTATGAGTAGAAAGCCTCCCACTCCCCTGTTTCCTCCTGGAAGGATGTGTGGTGGCGTATTCCTCCTGTGGCTGTACACCTTTGGTCTACTAGACTTGATAAGTGACAGCTGAACTGTCTAGTCTGCTGAACGATGTCTACTCTATAACAGACTCAACATTTCCCAGTTCTACTTGCTCCATGAGGTGCATTTCTTATTGTAGCTGGCAATTTCATGATTAGCCGGGCACTGGTTCTTCAGCCGGCCCTGAACCGAAGACACCACCTGCTCCCCTTGGGGCTGGCACAGATGAGCTCCTGGACCTGCACTGTGCTCAAGCTGCCCATGGAGGAGTTCTGGAGGTTCTGGATGAAGCAACCCGGCTGAAGAACAGTGTGGTGTTACAGCTCACCTTCGGTTCATCTGAACACTCTTCATGGCTCTCTTTCTCCTTCACAGAATACTTGGAGCCTGCTCCAGGGATGAAGGATCAGCGgactgattggaatgttgttccaggatcagcctaaatgttaatccaggaacgtCCCTGATGAAATCAGATTACCCTCTCTTAATGCAGGAACCGATGTGAGGTCTTCCAGAAGCTGAGGACTCCTTAGCCCGGACAGGTCACTGTACTTCATCATCATGAGCGAATCACGACTCCAGCTATGCCTTTGCTGTCCCTCAACCCTCTCTCATCAGTTCTGGACCCTTAGCAGGAGGCAGGCCACCTTTTATTACAAGTCCAAGCTAATGCCAAAAGTTCAGCATCTCCAAGAGGCATGGACCAGCATGGCTCTTCCAGAGACGCCCACCTTCACAGACGTCTACACGACATTCACAACCCATGTGTGTAGCTGTACTtttgctgcatcccaaatggaaattacaggagttttccaggagaaataacaagacgggagggtggcgggagacgggtctgaaatacaggacaCTCCCAGgactgttggcagATGGAGTTTTTCTTCTTGATCTCCTGCAATTTGTCTGACATGATTGCCGCTTTGACATTATGGGCTGAGGAAGGAGACGGTGACCTCGCTCGTGCCGTGTGGTCCGGCTGAAGATCAAACGCCTGGAGAACAGGGTCACGCTGGAGATTAGGTCTGCACGATAGTTAGAAAAACTAACATTGCAGTATTTTGCTGTTCTGtg
>TCONS_00021668
TTCTGGATGAAGCAACCCGGCTGAAGAACAGTGTGGTGTTACAGCTCACCTTCGGTTCATCTGAACACTCTTCATGGCTCTCTTTCTCCTTCACAGAATACTTGGAGCCTGCTCCAGGGATGAAGGATCAGCGgactgattggaatgttgttccaggatcagcctaaatgttaatccaggaacgtCCCTGATGAAATCAGATTACCCTCTCTTAATGCAGGAACCGATGTGAGGTCTTCCAGAAGCTGAGGACTCCTTAGCCCGGACAGGTCACTGTACTTCATCATCATGAGCGAATCACGACTCCAGCTATGCCTTTGCTGTCCCTCAACCCTCTCTCATCAGTTCTGGACCCTTAGCAGGAGGCAGGCCACCTTTTATTACAAGTCCAAGCTAATGCCAAAAGTTCAGCATCTCCAAGAGGCATGGACCAGCATGGCTCTTCCAGAGACGCCCACCTTCACAGACGTCTACACGACATTCACAACCCATGTGTGTAGCTGTACTtttgctgcatcccaaatggaaattacaggagttttccaggagaaataacaagacgggagggtggcggga

Function

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0009988 cell-cell recognition biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021858 False 2544 lncRNA 0.46 4 186574 190975
TCONS_00021668 True 576 lncRNA 0.49 2 188391 189042

Neighbor

gene id symbol gene type direction distance location
XLOC_009595 si:ch211-201o1.1 coding upstream 18424 152182 ~ 168150 (+)
XLOC_009594 NA coding upstream 57548 127435 ~ 129026 (+)
XLOC_009593 NA coding upstream 64533 121024 ~ 122041 (+)
XLOC_009592 sox4b coding upstream 115466 68069 ~ 71108 (+)
XLOC_009591 cdkal1 coding upstream 133438 39498 ~ 53136 (+)
XLOC_009597 nrsn1 coding downstream 30764 221739 ~ 229482 (+)
XLOC_009598 LO017841.1 coding downstream 229147 420122 ~ 513158 (+)
XLOC_009599 NA coding downstream 241995 432970 ~ 457475 (+)
XLOC_009600 NA coding downstream 425238 616213 ~ 642909 (+)
XLOC_009601 irx1a coding downstream 622805 813780 ~ 817937 (+)
XLOC_009602 NA non-coding downstream 841600 1032575 ~ 1035953 (+)
XLOC_009605 LO017852.3 non-coding downstream 1021699 1212674 ~ 1212788 (+)

Expression


Co-expression Network