XLOC_009609 (celf3b)


Basic Information

Item Value
gene id XLOC_009609
gene name celf3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1334431 ~ 1359903 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019302
tGCCTCTGTTATTCCCTCCATCGCCAGCGACCCAATGAAGGAGCCGGACGCCATCAAACTCTTCATCGGGCAGATCCCGCGAAACCTGGAGGAAAAGGACCTGAAGCCCATCTTCGAGCAGTACGGCAAGATCTACGAGCTGACTGTGATCAAGGACAAGTACACGGGCATGCACAAAGGATGCGCCTTTCTGACATATTGTGCACGAGAGTCAGCCGTCAAAGCGCAGAGTGCTCTTCATGAACAGAAAACACTGCCAGGGATGAACCGACCCATCCAGGTGAAGCCTGCAGACAGTGAAGGGAGAGGAGAGGACAGAAAGCTGTTTGTGGGCATGTTGGGAAAGCAGCAGTCGGATGAAGACGTGAGGAAGATTTTCGAGCCGTTCGGCGGTATTGATGAGTGTACGGTGCTTAGAGGACCTGACGGCACCAGCAAAGgCTGTGCGTTTGTGAAGTTTCAGAGTCACTCAGAAGCTCAATCTGCCATCAACAGTCTGCACGGGAGCCGGACTCTACCTggcGCCTCCTCCAGTCTGGTGGTGAAGTTTGCAGACACAGAGAAGGAGCGCGGTGTGCGGCGCATGCAACAGGTCACATCACAGCTCGGCGTCTACACTCCAGTGACGCTCAACTTCAATGCTTATAATGCCTACACACAAGCGctggtCCAGCAGCAGGCTCTGGTAGCCCAGGCTCAGTATCTGTCTCCCGCAGCATCAATGCAGATCCAGCAGATGGCAGCACTCAACGCCAGCGGCATCATTGCTACACCCATCACACCTCCATCCGGTGCAAACACTCCACCCACTCTTGCAGCCACGCCCGTGTCAGCTCTGCCTCAACCAATCGCAGTGAACGGCTACAGTCACTTACCACCAACAACCAATGGACAGCCAGCGTCAGAAATCTACACCAATGGCCTTCATCCATATCAAGCCCAGAGTCCAGTGGCGGCGTTAGACCCGCTCCAACAGGCCTACGCAGGCATGCAGCAttacacagcTGCTTACCCGACAGCATATGGACTGGTGAGCCCTCAGTTCCTCCAGCAGCCCACACTGATCAGCCAACAGCAGCTGCAGAGAGAAGgTCCTGAGGGCTGTAATGTCTTCATTTACCATTTACCTCAAGAGTTCACTGACTCAGAAATGCTCCAGATGTTTCTGCCTTTCGGCAACGTCATTTCTGCTAAAGTGTTTGTGGATCGGGCAACCAATCAAAGCAAGTGCTTCGGCTTTGTGAGCTTTGATAATCCAGCGAGTGCTCAGACGGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTGCAGCTGAAGAGGCCCAAAGATGCCAACAGGCCCTACTGA
>TCONS_00019303
AGAGGACAGAAAGCTGTTTGTGGGCATGTTGGGAAAGCAGCAGTCGGATGAAGACGTGAGGAAGATTTTCGAGCCGTTCGGCGGTATTGATGAGTGTACGGTGCTTAGAGGACCTGACGGCACCAGCAAAGgCTGTGCGTTTGTGAAGTTTCAGAGTCACTCAGAAGCTCAATCTGCCATCAACAGTCTGCACGGGAGCCGGACTCTACCTggcGCCTCCTCCAGTCTGGTGGTGAAGTTTGCAGACACAGAGAAGGAGCGCGGTGTGCGGCGCATGCAACAGGTCACATCACAGCTCGGCGTCTACACTCCAGTGACGCTCAACTTCAATGCTTATAATGCCTACACACAAGCGctggtCCAGCAGCAGGCTCTGGTAGCCCAGGCTCAGTATCTGTCTCCCGCAGCATCAATGCAGATCCAGCAGATGGCAGCACTCAACGCCAGCGGCATCATTGCTACACCCATCACACCTCCATCCGGTGCAAACACTCCACCCACTCTTGCAGCCACGCCCGTGTCAGCTCTGCCTCAACCAATCGCAGTGAACGGCTACAGTCACTTACCACCAACAACCAATGGACAGCCAGCGTCAGAAATCTACACCAATGGCCTTCATCCATATCAAGCCCAGAGTCCAGTGGCGGCGTTAGACCCGCTCCAACAGGCCTACGCAGGCATGCAGCAttacacagcTGCTTACCCGACAGCATATGGACTGGTGAGCCCTCAGTTCCTCCAGCAGCCCACACTGATCAGCCAACAGCAGCTGCAGAGAGAAGgTCCTGAGGGCTGTAATGTCTTCATTTACCATTTACCTCAAGAGTTCACTGACTCAGAAATGCTCCAGATGTTTCTGCCTTTCGGCAACGTCATTTCTGCTAAAGTGTTTGTGGATCGGGCAACCAATCAAAGCAAGTGCTTCGGCTTTGTGAGCTTTGATAATCCAGCGAGTGCTCAGACGGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTGCAGCTGAAGAGGCCCAAAGATGCCAACAGGCCCTACTGAGATTGACACAGGATGAAGATTATTGAAGAGCGACTGATTCAATCATGAGATGTT

Function

symbol description
celf3b Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-50 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3).

Ensembl:

ensembl_id ENSDARG00000006983

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019302 False 1363 mRNA 0.54 12 1334431 1359116
TCONS_00019303 True 1108 mRNA 0.53 10 1353894 1359903

Neighbor

gene id symbol gene type direction distance location
XLOC_009608 LO018340.1 coding upstream 12840 1254390 ~ 1321591 (+)
XLOC_009607 LO017852.1 coding upstream 94814 1228073 ~ 1239617 (+)
XLOC_009606 LO017852.2 coding upstream 113869 1220446 ~ 1220562 (+)
XLOC_009605 LO017852.3 coding upstream 121643 1212674 ~ 1212788 (+)
XLOC_009604 rprd2b coding upstream 123269 1199202 ~ 1211162 (+)
XLOC_009610 cers2b coding downstream 2347 1362250 ~ 1399328 (+)
XLOC_009611 NA coding downstream 360856 1720759 ~ 1721414 (+)
XLOC_009612 CABZ01085979.1 coding downstream 381034 1740937 ~ 1741058 (+)
XLOC_009613 NA coding downstream 416612 1776515 ~ 2105556 (+)
XLOC_009614 NA coding downstream 500481 1860384 ~ 1861160 (+)
XLOC_009602 NA non-coding upstream 298478 1032575 ~ 1035953 (+)
XLOC_009600 NA non-coding upstream 691522 616213 ~ 642909 (+)
XLOC_009599 NA non-coding upstream 876956 432970 ~ 457475 (+)
XLOC_009615 NA non-coding downstream 761768 2121671 ~ 2176051 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012612 LOC106609264,LOC108410639 coding PESF01000030.1 PESF01000030.1 85535 ~ 93064 (-)