XLOC_009615


Basic Information

Item Value
gene id XLOC_009615
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2121671 ~ 2176051 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021866
GCGTTTTTTCCGGCTCCCCCTTGTGGTTGATGAACGCTACTGCCAGTTGCTAGCGTCATAAAAATGTTGCTGATCTCACGAGCATTTGTTGACTGTAAACCGACACCTCGTTTGTAACCCACGTCCATCAACAAGGTCAGGATTTCTTCTCGGAGCAGGCTCCTTATTCCAGACACAATGCTGATGGGCTCACAGCGGCACGCGCTAGCGCTGGAGTGCAGTTCAGTGTGGATATCATCAGCAATCCTATCACATCATTGTGCTCCAACTGCAATTTTTCCCCGGTcaatgacacaaagagagaaagcGTGCGAGAGACGGGCGGACAGAGAATTACAGTAGTCACCTCGGCGGTGGAGGGTACTAATGGAAGTTTTTGGAGCCTTTGGACCACACTGAAAATGAAGAATGAAGGGATGCTGTGAAAGTGGTAATACAATAAGGCTAAGGTAATTGCTCTCAGTTCAAAACTGAATGACAAATGTCTCGGGCGCAAAATGAGATTCGTTCTTTCATGCTCCCGTGCTTTATAAAACAGTTCTCTCACTTCTATTATGCTGGAATAAAACGGCTGCATGAGTGATTCAATTCAAATCAAACTCTTGGCCTGGTGAACCTTGGAGTAGTCATTTTGAGAGCGAGCGACTTGAGAATGATCAAGTTTGCCTCATTGACATACAAACATCTTTTCTGGGGGCTCTTCTGGCCAAAGAATTAGTTTTTTCAACTCAAAGTTGAGTTTCAGCTTAGAAGGCAAGTGTGCTAGAATAATACTCTGACTGTAATGTCTTGTATTACATTAATATGCTGTAGAAAACAATGTATTATGACTAgcgccagacagaatctgcagatattttttgctatttctgcagagaattttgtagaATATCTGCAAATTCTATGAGGAATGATTATGAGAGTATTGTAACTAAaagcttaatatatgaaataaaaataatacctttttagctataaaggtgcagtatgtaagtttgaaacccagtggttaaactaggtattgcacgcctggttcaaaacacatgcaagcgcaggttgccagatgacaacatcaacaggagtgagcctaaaggctgatttaaactgtgttttaaataaaagcaaaggcATGTGACAGATGGATTATTTACCATATTAACaatcctaaccaacacctgaaatgtatattttagaaacggctgcTATCtcagctgaacaacagaataaattgacaatgatcag
>TCONS_00021867
CTCCCCCTTGTGGTTGATGAACGCTACTGCCAGTTGCTAGCGTCATAAAAATGTTGCTGATCTCACGAGCATTTGTTGACTGTAAACCGACACCTCGTTTGTAACCCACGTCCATCAACAAGGTCAGGATTTCTTCTCGGAGCAGGCTCCTTATTCCAGACACAATGCTGATGGGCTCACAGCGGCACGCGCTAGCGCTGGAGTGCAGTTCAGTGTGGATATCATCAGCAATCCTATCACATCATTGTGCTCCAACTGCAATTTTTCCCCGGTcaatgacacaaagagagaaagcGTGCGAGAGACGGGCGGACAGAGAATTACAGTAGTCACCTCGGCGGTGGAGGGTACTAATGGAAGTTTTTGGAGCCTTTGGACCACACTGAAAATGAAGAATGAAGGGATGCTGTGAAAGTGGTAATACAATAAGGCTAAGcaGGCTCAAGACTGGATTGGTTTTAACAGGAAATTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021866 False 1242 lncRNA 0.41 2 2121671 2158007
TCONS_00021867 True 474 lncRNA 0.48 3 2121684 2176051

Neighbor

gene id symbol gene type direction distance location
XLOC_009613 NA coding upstream 16115 1776515 ~ 2105556 (+)
XLOC_009614 NA coding upstream 260511 1860384 ~ 1861160 (+)
XLOC_009612 CABZ01085979.1 coding upstream 380613 1740937 ~ 1741058 (+)
XLOC_009611 NA coding upstream 400257 1720759 ~ 1721414 (+)
XLOC_009610 cers2b coding upstream 722343 1362250 ~ 1399328 (+)
XLOC_009616 LO017875.1 coding downstream 108005 2284056 ~ 2284174 (+)
XLOC_009617 CU928063.1 coding downstream 257645 2433696 ~ 2434462 (+)
XLOC_009618 cnih4 coding downstream 293838 2469889 ~ 2472577 (+)
XLOC_009619 preb coding downstream 389382 2565433 ~ 2583278 (+)
XLOC_009620 CU896588.1 coding downstream 553322 2729373 ~ 2729489 (+)
XLOC_009606 LO017852.2 non-coding upstream 901109 1220446 ~ 1220562 (+)
XLOC_009625 NA non-coding downstream 877373 3053424 ~ 3059091 (+)
XLOC_009627 NA non-coding downstream 960107 3136158 ~ 3137243 (+)
XLOC_009628 NA non-coding downstream 971211 3147262 ~ 3149817 (+)

Expression


Co-expression Network