XLOC_009618 (cnih4)


Basic Information

Item Value
gene id XLOC_009618
gene name cnih4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2469889 ~ 2472577 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019311
ATGGTTTGCATGTGTTTTTCTCTTGTTCAGTGGGTGATTCCCGAGCTGATCGCTCAGGCTCTGCCCACAGTCTTAATGCTGGTCTCCATGCACTGGTTTGTGCTCCTGCTCAACTTGCCTGTGGCTGCGTGGAACATTTACAGATTTGTGAAGGTGCCGATGGGGAACATGGGAGTTTACGACCCAACGGAGATCCACAACCGAGGCCAGCTGAAGACCCACATGAAGGAGGCCATGATCAAACTGGGTTTCCACCTGCTCTGCTTTTTCATCTACCTGTACAgTATGATCCTGGCGCTCATCAAcgactga

Function

symbol description
cnih4 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Orthologous to human CNIH4 (cornichon family AMPA receptor auxiliary protein 4).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-868 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Orthologous to human CNIH4 (cornichon family AMPA receptor auxiliary protein 4).

Ensembl:

ensembl_id ENSDARG00000087759

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019311 True 312 mRNA 0.51 3 2469889 2472577

Neighbor

gene id symbol gene type direction distance location
XLOC_009617 CU928063.1 coding upstream 35427 2433696 ~ 2434462 (+)
XLOC_009616 LO017875.1 coding upstream 185715 2284056 ~ 2284174 (+)
XLOC_009615 NA coding upstream 293838 2121671 ~ 2176051 (+)
XLOC_009613 NA coding upstream 364333 1776515 ~ 2105556 (+)
XLOC_009614 NA coding upstream 608729 1860384 ~ 1861160 (+)
XLOC_009619 preb coding downstream 92856 2565433 ~ 2583278 (+)
XLOC_009620 CU896588.1 coding downstream 256796 2729373 ~ 2729489 (+)
XLOC_009621 FEZ2 coding downstream 347763 2820340 ~ 2833536 (+)
XLOC_009622 clec3ba coding downstream 368198 2840775 ~ 2844195 (+)
XLOC_009623 lars2 coding downstream 427034 2899611 ~ 2990676 (+)
XLOC_009612 CABZ01085979.1 non-coding upstream 728831 1740937 ~ 1741058 (+)
XLOC_009625 NA non-coding downstream 580847 3053424 ~ 3059091 (+)
XLOC_009627 NA non-coding downstream 663581 3136158 ~ 3137243 (+)
XLOC_009628 NA non-coding downstream 674685 3147262 ~ 3149817 (+)
XLOC_009629 NA non-coding downstream 710172 3182749 ~ 3192150 (+)

Expression


Co-expression Network