XLOC_009619 (preb)


Basic Information

Item Value
gene id XLOC_009619
gene name preb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2565433 ~ 2583278 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019313
ACGTCATGCCGGTACGCGTGCGACGCAGGCGCGTAGGACGTGACGCAGTGCTGACGTGTGCCTAGGTAAACCAAGGAAGTAAATGGTGGTTCTATGACTGATGTTGTGAGACATCCAGAAGGGAAATACAGTGGCATGAGCTCTAAACACCGGGAAAACTCCAGCACGACACCGGAGAGCGTCCGCAGACACAGACCAGAATACAGAGAGCAGAGAGCATCATGGGTAAACGCAGAGCACCTGAGCTTTACAGAGCGCCGTTCCCTCTGTATACAGTGAAGATGGACCCCAGGACCGGCTTGATCATCActgctggaggaggaggagcgtCCAAAACGGGCATCAAGAACGCTGTGCATTTTCTGAGTCTGGATCTGGTGGGCGGTGCACACAGCGCCACCTTGCTGCACACTCATGAAACAGACACTCGAGCCACCATGAACATGTGTCTGGGAGGAGATGTGATGGCGGCAGGACAGGACGACACGTGCAGATTAATGAAGTTCAGTCTTCATGAAGCCAAACACAACAAGAAACCTGCGGCCAAAGATGGGACTGGAGATAAGGGTGGAGCCAGGAAGAGAGCAGGGAAAGGCCAGAATGCGGATGGAGGAGAAGGAGACGCAGCCCAGATGAAGCAGGATTCTACGCAGATCTCCGTGCAGGATTTGGGATCAGTACAGGCGGATTTCAGCCCGCAGGACCCCTGTGTGAAGTGTGTTCGCTTCAGTCTGGATCTAACGCTTCTGCTGAGTGGAGGAGCTGACGGGTTCGTCAGGGTGTgggagtTCCCCTCGCTGAAGGAGAAGCTGAACTTCAGAGCCCACAAGGATGAGCTGGAGGATATAGACATCAGCCCGGATAAAAAGCACATCGTGACGGTGGGCCGTGATTTCGAGTGCAGCGTGTGGAGCGGAGATCAGCTGGCTGTGGGGTTGTGTTGGCATGAAAATATGCCTCAGATCACAGAGAAGACGTACCGATACAAGGCATGCAGGTTTGCAAAGGTAGAGGACCAAAAAGATGCTTTAAGGCTGTATACAGTCCAAATCCCCCACAAACGAGACCGCAAACCCCCTCCATGCTACATCACCAAATGGGACGGTCGAGCTTTCCTGCCGCTGCTCACCAAGCCCTGTGGGAATGAAGTGATCTCCTGTCTGACAGCGAGTGATTCGGGGACATTTCTTGGTCTTGGAACTGTGACGGGATCTGTGGCCATCTATATAGCGTTTTCCCTGCAGAAGCTCTACTACATCCAGGAGTCTCATGGCATTGTTGTGACTGACCTGACGTTTTTACCTGACGCTCCTAAAACTAAAGCCGTCAAAGGAGATAATGAAGTGGTGATGCTGAGCGTGGCGGTCGACAGCCGCTGTCAGGTGCACGCCGTCTCCAACCGCAGTAAGTATCATATACAGACCTTtatcatggctgctgcatggatggtaccatagcgaccagcgtcttccggtagaatgctaaaaacttcggttcacagcgtgtacaactggtcatttgcgctccgaaaatgggtttcaataacgtttttaatggataacagagcgtttatgtgacacacaacttagaaatgtgtctgttaaagccgttataatctgtcacatgtggttcaagcgtgtcaggaatacgagaaaaacgttctcctagttcacgtgtctgccatcagaaatacagtgtgtgtgtgcgcgttcccaacctgtcagctgttagctcagtggctctttaacacacacacacacacacacacacacagagacacacacacacagagacacacacacacacagagacacacacacagagacacacacacagagacacacacagagagagagagagagagagagagagagagagagagagagagagagagtgcactggcatgaaacttaacaggtatgaaagtggtgcaatttacaaaaatgagcaataaaagtctgttattgatcctctgctgctgatttgctgttcattctaatcgcgagccgtttgtgttttattttgtgtgttgtttttatcacggtttgtgtttttctgtcatttcgaaatgactcTAGCctgtattttcactttgtcacggttattaaatcagtgtgtcagtggcacagtacaggctacgtgtgtgtgtcaaacattttggtgaactacattagtttgggctggttatatatttgaaataaagagaaaatgttgactttagcgatgacgaggcttctccttgcgcatacacgcaaagcactatgggtaattttgcgttccaagaaaaaggtctatatatatatatatttggatgtAAACTTGCGCAAGAGGGCAGGTCAATATTTCACTCAGACATCATGAcaattttcccagtgatgggttgcagctggaagggcatccgctgcgtaaaaacatgctggataagttggcggttcattccgctgtggcgaccccggattaacaaagggacaaagctgacaagaaattgaatgaatgaatgaatgaatcatgacAAAATAGCTAAAAATCCTGAAATTGATTTCTGTACGTCTGACATGAATCTGACATGTAAATGACTctcttgtgtttgtgtttaggGTCGTTCCCGCTCTGGCTGGTGCTGTTTTTCTGTGGTCTGATGGTGGTTGCAGTCATTTTGCTCCTGCAGTCATTTTTCCCAGGATTCATCTAAGCTCTGAGCGTAAGCTTTTACACAGTCAAATGACTTGAAGCAAACTGGGATCTATGAAATGGTTGTAATCAGTTGGAAATAGTGATGGGAATGGCCTCATCTCTGGAGTTCTCTGAATCAGATTGGATGAAGAATTTGGGCATAACCTGAGTGAGCAGTTTCTCCCTCATCATTGAGCGAAAAGCTGCTTGTATACAGGACTGGATTTCCTGGTATGGACGTCTGCCGCTCCACCAGTATGTCAAGAAATGCCTTTTAGTGAAACGGAGAAGAAGAAAGCGTGCAGGGAATTTCAATggtgaattattttaaatatttaaaaaatctaaatatacatCTGAAAACAAGCTGCTGCAAGTCtcgcaattatttttgtcatttattaacttttaattttcagtctgCATGACGTTGCAAAATCGccgcatttaaggtctgttttcctAAAAATCAACAATCTTCAATGCATGattgatatatgatatgaagtgggttcagaatgtacactacctgactaaagttgatcatttggtatcagaagtggcttatatgaaaggcaaaggcctctagatgacacttatttgaccacaataatatatgatcatgcctttattctttaattctttaattaggacagtaaggtctgactctgcttagactaaagtctcatcactgaacagaaataatgttgagtatagaatataaagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgattaatgaagtcatctggaatggcaaagaaagccttcttgcaggactcccagagctcatcaagactctttgggttcatcttcaatgcctcctccttcatcttactccagacatgctcgataatattcatgtctggtgactgggctggccaatcctggagcactctttgctttcagaagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaatcgtccctctgctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgatcatccactctgcagatctctcgcacgccctcatactgaatgcGACCCTAAACCATgagttttccttcaccaaacttgactgatttctatgagaatcttgggtctgtgtgggttccagtaggtcttctgcagtatttgtgatgactgggatgcagatcaacagatgaaaaatccaccttctgacacttttccagaTGATCATCTTGatttagaagtcaagttattatctggtGCTCTtgcaactgggattgacgacaagacttttgtcaggtagtttatattAATCAAAGCCTGATAACACAATATCAAATATAGAGgggaaaaaattttaataaaatcttcaatataatacatatacctactattattattattattattattattattattgttttgttcatattaCAAATATACATACAGATAAAGCAAACAGTGGGTAATTTATTAGGTACGTTACTGTAGGTTTATTTATGCGTAGCATTTAagatattataaaaacaaattaataataataatgacagtaataaacacattaagtaaCATTTTAGTACCAATGtacaccatttactactggcttattactagggccacacaaaatctgcattgttttgctatttctgctgagagttttgttaaaatttatgtggaattattttgggattttcataactaaaaacttatatgaaataaaaaataataccttttttacttgtatttaatgtttaaaatgcaaatccaattagatccactttattcgGTAAACAAAGCGAGTCTCTCATATAAAATCTCTACTATAAGACAGACAATATTACTTCACAAACTgtgttgtacataaatcagatgaacattttcacatcagtctataaaattactaaaattaacttaaaaactgagtaaatataaatcaacagatgattcatcagagaaatccTCCTCCTGCTACTTTTccagatgatcaactagaagtcaagttattatctgttgctcttacaaacaactgggatcaatgacaagacttttgtcaggtgttgTACACGAAGcgctgcattaaattccatttttctgcgtcttctttaaaatatgaaaataattttgagtattttcaatggaattatTGCTCTCGCCTGCatgtaaacagcttttcatcttgttttacgcttgaacaacttaATGAAcgcttaagtctgtttaacttttatgtattttaagtacacaacaacatcgatgctgtaaaaggaaccgtataacaTTAAAGTCATATAaatctttcaccagaagtttaggGGTAGGGGAAAAATACTAGctttgcatataccctattaacaGTCCCTTGCATCCCTTGTCTTAAACCATCtcttgactttcttctgttgaacacaacacaagacattttgaagaatgttacaaactggaaaccattgacctccatagtatttcatttgcctttaaatgtcaatggttaccggtttctaaaatccattcattttttttcagcttagtgccttatttatcaggggtcgtcacagcggaatgaaccgccaactattccagcatatgttgtatgcagcggatgcccttccagctgcaacccagtactgggaaacacccatgcacactcattcacacacacacacacactcgtacaatacagccaatttagttcacccaattcacctatagcgcatgtgtttttgactgtgaaacccatgccaacaagggcagaacatgcaaactccacacagaaacaccaactgacccagccgtgactTGAACcagcaccttcttgctgtgaggccaaagTGCTAACCGATgaaccactgtgtcgccccttTCTAACATCTGCTTATCCCTTTaaggtagcgatgtcgcctcacagcaagaaggtcactagttcgagcctatGCTGgttcagttgggatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctcaggcttcccccacagtccaaagacatgcggtacaggtgatttgggttagctaaattgtagtgtgtgaatgtgagagtgtatgggtgttttgcagtactgggttgcagctaaaagggcatccgctgtatgaaacatatgctggataagttggcagttcattccgctgtggcgacccctatattaat
>TCONS_00019312
ACGTCATGCCGGTACGCGTGCGACGCAGGCGCGTAGGACGTGACGCAGTGCTGACGTGTGCCTAGGTAAACCAAGGAAGTAAATGGTGGTTCTATGACTGATGTTGTGAGACATCCAGAAGGGAAATACAGTGGCATGAGCTCTAAACACCGGGAAAACTCCAGCACGACACCGGAGAGCGTCCGCAGACACAGACCAGAATACAGAGAGCAGAGAGCATCATGGGTAAACGCAGAGCACCTGAGCTTTACAGAGCGCCGTTCCCTCTGTATACAGTGAAGATGGACCCCAGGACCGGCTTGATCATCActgctggaggaggaggagcgtCCAAAACGGGCATCAAGAACGCTGTGCATTTTCTGAGTCTGGATCTGGTGGGCGGTGCACACAGCGCCACCTTGCTGCACACTCATGAAACAGACACTCGAGCCACCATGAACATGTGTCTGGGAGGAGATGTGATGGCGGCAGGACAGGACGACACGTGCAGATTAATGAAGTTCAGTCTTCATGAAGCCAAACACAACAAGAAACCTGCGGCCAAAGATGGGACTGGAGATAAGGGTGGAGCCAGGAAGAGAGCAGGGAAAGGCCAGAATGCGGATGGAGGAGAAGGAGACGCAGCCCAGATGAAGCAGGATTCTACGCAGATCTCCGTGCAGGATTTGGGATCAGTACAGGCGGATTTCAGCCCGCAGGACCCCTGTGTGAAGTGTGTTCGCTTCAGTCTGGATCTAACGCTTCTGCTGAGTGGAGGAGCTGACGGGTTCGTCAGGGTGTgggagtTCCCCTCGCTGAAGGAGAAGCTGAACTTCAGAGCCCACAAGGATGAGCTGGAGGATATAGACATCAGCCCGGATAAAAAGCACATCGTGACGGTGGGCCGTGATTTCGAGTGCAGCGTGTGGAGCGGAGATCAGCTGGCTGTGGGGTTGTGTTGGCATGAAAATATGCCTCAGATCACAGAGAAGACGTACCGATACAAGGCATGCAGGTTTGCAAAGGTAGAGGACCAAAAAGATGCTTTAAGGCTGTATACAGTCCAAATCCCCCACAAACGAGACCGCAAACCCCCTCCATGCTACATCACCAAATGGGACGGTCGAGCTTTCCTGCCGCTGCTCACCAAGCCCTGTGGGAATGAAGTGATCTCCTGTCTGACAGCGAGTGATTCGGGGACATTTCTTGGTCTTGGAACTGTGACGGGATCTGTGGCCATCTATATAGCGTTTTCCCTGCAGAAGCTCTACTACATCCAGGAGTCTCATGGCATTGTTGTGACTGACCTGACGTTTTTACCTGACGCTCCTAAAACTAAAGCCGTCAAAGGAGATAATGAAGTGGTGATGCTGAGCGTGGCGGTCGACAGCCGCTGTCAGGTGCACGCCGTCTCCAACCGCAgGTCGTTCCCGCTCTGGCTGGTGCTGTTTTTCTGTGGTCTGATGGTGGTTGCAGTCATTTTGCTCCTGCAGTCATTTTTCCCAGGATTCATCTAAGCTCTGAGCGTAAGCTTTTACACAGTCAAATGACTTGAAGCAAACTGGGATCTATGAAATGGTTGTAATCAGTTGGAAATAGTGATGGGAATGGCCTCATCTCTGGAGTTCTCTGAATCAGATTGGATGAAGAATTTGGGCATAACCTGAGTGAGCAGTTTCTCCCTCATCATTGAGCGAAAAGCTGCTTGTATACAGGACTGGATTTCCTGGTATGGACGTCTGCCGCTCCACCAGTATGTCAAGAAATGCCTTTTAGTGAAACGGAGAAGAAGAAAGCGTGCAGGGAATTTCAATggtgaattattttaaatatttaaaaaatctaaatatacatCTGAAAACAAGCTGCTGCAAGTCtcgcaattatttttgtcatttattaacttttaattttcagtctgCATGACGTTGCAAAATCGccgcatttaaggtctgttttcctAAAAATCAACAATCTTCAATGCATGattgatatatgatatgaagtgggttcagaatgtacactacctgactaaagttgatcatttggtatcagaagtggcttatatgaaaggcaaaggcctctagatgacacttatttgaccacaataatatatgatcatgcctttattctttaattctttaattaggacagtaaggtctgactctgcttagactaaagtctcatcactgaacagaaataatgttgagtatagaatataaagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgattaatgaagtcatctggaatggcaaagaaagccttcttgcaggactcccagagctcatcaagactctttgggttcatcttcaatgcctcctccttcatcttactccagacatgctcgataatattcatgtctggtgactgggctggccaatcctggagcactctttgctttcagaagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaatcgtccctctgctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgatcatccactctgcagatctctcgcacgccctcatactgaatgcGACCCTAAACCATgagttttccttcaccaaacttgactgatttctatgagaatcttgggtctgtgtgggttccagtaggtcttctgcagtatttgtgatgactgggatgcagatcaacagatgaaaaatccaccttctgacacttttccagaTGATCATCTTGatttagaagtcaagttattatctggtGCTCTtgcaactgggattgacgacaagacttttgtcaggtagtttatattAATCAAAGCCTGATAACACAATATCAAATATAGAGgggaaaaaattttaataaaatcttcaatataatacatatacctactattattattattattattattattattattgttttgttcatattaCAAATATACATACAGATAAAGCAAACAGTGGGTAATTTATTAGGTACGTTACTGTAGGTTTATTTATGCGTAGCATTTAagatattataaaaacaaattaataataataatgacagtaataaacacattaagtaaCATTTTAGTACCAATGtacaccatttactactggcttattactagggccacacaaaatctgcattgttttgctatttctgctgagagttttgttaaaatttatgtggaattattttgggattttcataactaaaaacttatatgaaataaaaaataataccttttttacttgtatttaatgtttaaaatgcaaatccaattagatccactttattcgGTAAACAAAGCGAGTCTCTCATATAAAATCTCTACTATAAGACAGACAATATTACTTCACAAACTgtgttgtacataaatcagatgaacattttcacatcagtctataaaattactaaaattaacttaaaaactgagtaaatataaatcaacagatgattcatcagagaaatccTCCTCCTGCTACTTTTccagatgatcaactagaagtcaagttattatctgttgctcttacaaacaactgggatcaatgacaagacttttgtcaggtgttgTACACGAAGcgctgcattaaattccatttttctgcgtcttctttaaaatatgaaaataattttgagtattttcaatggaattatTGCTCTCGCCTGCatgtaaacagcttttcatcttgttttacgcttgaacaacttaATGAAcgcttaagtctgtttaacttttatgtattttaagtacacaacaacatcgatgctgtaaaaggaaccgtataacaTTAAAGTCATATAaatctttcaccagaagtttaggGGTAGGGGAAAAATACTAGctttgcatataccctattaacaGTCCCTTGCATCCCTTGTCTTAAACCATCtcttgactttcttctgttgaacacaacacaagacattttgaagaatgttacaaactggaaaccattgacctccatagtatttcatttgcctttaaatgtcaatggttaccggtttctaaaatccattcattttttttcagcttagtgccttatttatcaggggtcgtcacagcggaatgaaccgccaactattccagcatatgttgtatgcagcggatgcccttccagctgcaacccagtactgggaaacacccatgcacactcattcacacacacacacacactcgtacaatacagccaatttagttcacccaattcacctatagcgcatgtgtttttgactgtgaaacccatgccaacaagggcagaacatgcaaactccacacagaaacaccaactgacccagccgtgactTGAACcagcaccttcttgctgtgaggccaaagTGCTAACCGATgaaccactgtgtcgccccttTCTAACATCTGCTTATCCCTTTaaggtagcgatgtcgcctcacagcaagaaggtcactagttcgagcctatGCTGgttcagttgggatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctcaggcttcccccacagtccaaagacatgcggtacaggtgatttgggttagctaaattgtagtgtgtgaatgtgagagtgtatgggtgttttgcagtactgggttgcagctaaaagggcatccgctgtatgaaacatatgctggataagttggcagttcattccgctgtggcgacccctatattaat

Function

symbol description
preb Predicted to enable GTPase activator activity. Predicted to be involved in protein secretion and regulation of COPII vesicle coating. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including axis; nervous system; notochord; polster; and solid lens vesicle. Orthologous to human PREB (prolactin regulatory element binding).

GO:

id name namespace
GO:0009306 protein secretion biological_process
GO:0003400 regulation of COPII vesicle coating biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0051020 GTPase binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040718-385 Predicted to enable GTPase activator activity. Predicted to be involved in protein secretion and regulation of COPII vesicle coating. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including axis; nervous system; notochord; polster; and solid lens vesicle. Orthologous to human PREB (prolactin regulatory element binding).

Ensembl:

ensembl_id ENSDARG00000101602

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019313 False 5909 mRNA 0.43 9 2565433 2583278
TCONS_00019312 True 4716 mRNA 0.43 10 2565433 2583278

Neighbor

gene id symbol gene type direction distance location
XLOC_009618 cnih4 coding upstream 92856 2469889 ~ 2472577 (+)
XLOC_009617 CU928063.1 coding upstream 130971 2433696 ~ 2434462 (+)
XLOC_009616 LO017875.1 coding upstream 281259 2284056 ~ 2284174 (+)
XLOC_009615 NA coding upstream 389382 2121671 ~ 2176051 (+)
XLOC_009613 NA coding upstream 459877 1776515 ~ 2105556 (+)
XLOC_009620 CU896588.1 coding downstream 146095 2729373 ~ 2729489 (+)
XLOC_009621 FEZ2 coding downstream 237062 2820340 ~ 2833536 (+)
XLOC_009622 clec3ba coding downstream 257497 2840775 ~ 2844195 (+)
XLOC_009623 lars2 coding downstream 316333 2899611 ~ 2990676 (+)
XLOC_009624 CABZ01043952.1 coding downstream 421144 3004422 ~ 3027240 (+)
XLOC_009614 NA non-coding upstream 704273 1860384 ~ 1861160 (+)
XLOC_009612 CABZ01085979.1 non-coding upstream 824375 1740937 ~ 1741058 (+)
XLOC_009625 NA non-coding downstream 470146 3053424 ~ 3059091 (+)
XLOC_009627 NA non-coding downstream 552880 3136158 ~ 3137243 (+)
XLOC_009628 NA non-coding downstream 563984 3147262 ~ 3149817 (+)
XLOC_009629 NA non-coding downstream 599471 3182749 ~ 3192150 (+)

Expression


Co-expression Network