XLOC_009622 (clec3ba)


Basic Information

Item Value
gene id XLOC_009622
gene name clec3ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2840775 ~ 2844195 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019318
ATGGATCTCAAAGCTGTCAAGTTTCTTTTGTGCGTCATTTGTTTGGTGAAGTCCAGTCCTGAGCAGAGCCTGACAAAGAGGAAGAACGGGAAAAAAGAGTCGAACAGCGCTGCTATTGAAGAGCTGAAGAAACAGATCGATCAGATCATTCAGGATCTCAATCTGCTGAAGGAACAACAGGCCTTACAAACAGTGTGTCTAAAAGGCTTCAAGATCCCAGGCAAATGCTTTCTTGTGGACACAGTGAAGAAAGATTTCCACTCGGCCAATGATGATTGCATTGCTAAAGGAGGGATTCTCAGCACTCCAATGTCCGGCCATGAAAACGACCAGCTCCAGGAGTACGTCCAGCAGACCGTCGGCCCAGAAACACACATCTGGCTGGGGGTCAATGACATGATAAAGGAGGGTGAGTGGATAGACTTGACAGGCTCACCAATACGCTTTAAGAACTGGGAATCGGAGATTACACACCAGCCTGATGGAGGACGCACACACAACTGCGCTGTCCTGTCCAGTACGGCCAACGGGAAGTGGTTTGATGAGGACTGCCGTGGAGAAAAGGCGTCTGTGTGCCAGTTTAATATCGTTTGA
>TCONS_00019319
GTGTGGTAAAAAGAGTCGAACAGCGCTGCTATTGAAGAGCTGAAGAAACAGATCGATCAGATCATTCAGGATCTCAATCTGCTGAAGGAACAACAGGCCTTACAAACAGTGTGTCTAAAAGGCTTCAAGATCCCAGGCAAATGCTTTCTTGTGGACACAGTGAAGAAAGATTTCCACTCGGCCAATGATGATTGCATTGCTAAAGGAGGGATTCTCAGCACTCCAATGTCCGGCCATGAAAACGACCAGCTCCAGGAGTACGTCCAGCAGACCGTCGGCCCAGAAACACACATCTGGCTGGGGGTCAATGACATGATAAAGGAGGGTGAGTGGATAGACTTGACAGGCTCACCAATACGCTTTAAGAACTGGGAATCGGAGATTACACACCAGCCTGATGGAGGACGCACACACAACTGCGCTGTCCTGTCCAGTACGGCCAACGGGAAGTGGTTTGATGAGGACTGCCGTGGAGAAAAGGCGTCTGTGTGCCAGTTTAATATCGTTTGAATTATTAAAGGGGTGGTATTAGAGGGGTAGCAGTGGTCCCCCAAGAATATGCATGGCTCGCCTGATAATTCACTGAAAAATCCTGTACATTTATGGTACAATGCTATTGGATTAAAGTGCTGTCAATTTCACAATGC

Function

symbol description
clec3ba Predicted to be involved in bone mineralization. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in osteoarthritis. Orthologous to human CLEC3B (C-type lectin domain family 3 member B).

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0030282 bone mineralization biological_process
GO:0005615 extracellular space cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-71 Predicted to be involved in bone mineralization. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in osteoarthritis. Orthologous to human CLEC3B (C-type lectin domain family 3 member B).

Ensembl:

ensembl_id ENSDARG00000076541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019318 False 594 mRNA 0.49 3 2840775 2844058
TCONS_00019319 True 647 mRNA 0.47 2 2843428 2844195

Neighbor

gene id symbol gene type direction distance location
XLOC_009621 FEZ2 coding upstream 7239 2820340 ~ 2833536 (+)
XLOC_009620 CU896588.1 coding upstream 111286 2729373 ~ 2729489 (+)
XLOC_009619 preb coding upstream 257497 2565433 ~ 2583278 (+)
XLOC_009618 cnih4 coding upstream 368198 2469889 ~ 2472577 (+)
XLOC_009617 CU928063.1 coding upstream 406313 2433696 ~ 2434462 (+)
XLOC_009623 lars2 coding downstream 55416 2899611 ~ 2990676 (+)
XLOC_009624 CABZ01043952.1 coding downstream 160227 3004422 ~ 3027240 (+)
XLOC_009625 NA coding downstream 209229 3053424 ~ 3059091 (+)
XLOC_009626 cyb5r4 coding downstream 222939 3067134 ~ 3096745 (+)
XLOC_009627 NA coding downstream 291963 3136158 ~ 3137243 (+)
XLOC_009616 LO017875.1 non-coding upstream 556601 2284056 ~ 2284174 (+)
XLOC_009615 NA non-coding upstream 664724 2121671 ~ 2176051 (+)
XLOC_009613 NA non-coding upstream 735219 1776515 ~ 2105556 (+)
XLOC_009628 NA non-coding downstream 303067 3147262 ~ 3149817 (+)
XLOC_009629 NA non-coding downstream 338554 3182749 ~ 3192150 (+)
XLOC_009631 CABZ01052320.1 non-coding downstream 509306 3353501 ~ 3353617 (+)

Expression


Co-expression Network