CI01000050_07207399_07217984 (OGG1)


Basic Information

Item Value
gene id CI01000050_07207399_07217984
gene name OGG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 7207175 ~ 7217984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_07207399_07217984.mRNA
ATGGCGGTCAATCACATGTCCACGGTCAGAGCTTCGTCTGGATCTCACTCTGGGATGTGGTCAGACCTTCCGATGGCGCGAGACTGCAGATGGTCACTGGACGGGAGTAATGCGGGGGAAAGTGTGGACACTAACTCAAACAGAGGATATGTTATGGTACTATGTTTACAGTCATCAAAAAAATCCTGGAACACAAAAAAGTCAAAAACAAAAAGTGGAAGAGAAGGAGCAGTTATTGGAGTGCGTTTGTTGCGTCAAGATCCTGTGGAGTGTCTTTTCTCATTCATCTGCAGCTCTAATAATCACATCTCGCGGATTCAGGGTATGGTTGACAGACTGTGTCAGACACTCGGGACTCTCCTCTGCAAGCTTGATGATGTGGCCTATCATGATTTCCCCCCTCTGCAAGATCTTACAGACCCTAGTGTGGAGATGCGTTTGCGTGACTTGGGTTTTGGCTACCGTGCTCGTTTTCTGCAGCAGAGCTCACAAACCATTGTGAACTCTCATGGCCCTGACTGGCTCCATTCACTCCGCAGCGCTCCCTACCTGCAGACCAGAGATGCACTGAGAACTCTTCCTGGAGTTGGTCTCAAAGTGGCTGACTGTGTATGTCTGATGTCACTGGACAAGTTTGAGGCGCTTCCTGTGGACACACATGTGTGGCAGATCGCCAAACGTGACTACAACTTTGCAGCCGGTAACAGCCAGAAGACCTTGACTGATAGAGTCTACAAAGAGATTGGTGACTTCTTTAGAAAACTCTGGGGTCCCTATGCCGGCTGGGCACAGTCTGTACTTTTCTGTGCTGATCTTAAGAAGTTTCAGAAGCTGAGAGAAGAGATTCCTGTAATGAAAGATGAGAAAACTGAGCTGAAGAACAAGATGAAAAAGAGAAGACATGACGGATATAAACAAGAACAGAAAAGAGAAAAAGGCAATAAGCATCAGAGGTCATAAGATCAAATGATAGTCTGGATAACATTCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCTTCTTTTGAATTTCCACAATATATATCAGAATTTCAAACAGCTTAGTTTTATTGGTAATTTCAAGGAAGGAACAATATTTTCCGCTGTGTATTACAATTGTGCAGTTAAACACTCTGAAGGGTTTGTTGTTGTTCCAGAGTTTGTGAGCCAATCAGAATAAA

Function

symbol description
ogg1 Predicted to enable 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity. Acts upstream of or within animal organ development; negative regulation of neuron apoptotic process; and regulation of neuron projection development. Predicted to be active in nucleus. Is expressed in several structures, including anterior lateral plate mesoderm; anterior presumptive neural plate; nervous system; pericardial region; and pronephric duct. Human ortholog(s) of this gene implicated in several diseases, including Graves' disease; angiomyolipoma; carcinoma (multiple); eye disease (multiple); and reproductive organ cancer (multiple). Orthologous to human OGG1 (8-oxoguanine DNA glycosylase).

GO:

id name namespace
GO:0003313 heart rudiment development biological_process

KEGG:

id description
K03660 OGG1; N-glycosylase/DNA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_07207399_07217984.mRNA True 1184 mRNA 0.45 7 7207175 7217984

Neighbor

gene id symbol gene type direction distance location
CI01000050_07155856_07157697 NA coding downstream 49478 7154965 ~ 7157697 (-)
CI01000050_07047887_07057166 TAS1R2.2 coding downstream 149761 7047552 ~ 7057414 (-)
CI01000050_07037053_07037750 HER3 coding downstream 169361 7036592 ~ 7037814 (-)
CI01000050_07030874_07033872 NA coding downstream 173303 7030635 ~ 7033872 (-)
CI01000050_06949824_06962679 NA coding downstream 243529 6949347 ~ 6963646 (-)
CI01000050_07239689_07244721 NA coding upstream 21631 7239615 ~ 7244721 (-)
CI01000050_07307744_07309403 NA coding upstream 89427 7307411 ~ 7310537 (-)
CI01000050_07338022_07340567 ANGPTL7 coding upstream 119461 7337445 ~ 7341011 (-)
G216879 NA non-coding downstream 33425 7168326 ~ 7173750 (-)
G216935 NA non-coding downstream 39122 7167835 ~ 7168053 (-)
G216930 NA non-coding downstream 49000 7157750 ~ 7158175 (-)
G216927 NA non-coding downstream 57270 7149521 ~ 7149905 (-)
G216986 NA non-coding upstream 131889 7349873 ~ 7351492 (-)
G217012 NA non-coding upstream 184489 7402473 ~ 7460138 (-)
G217033 NA non-coding upstream 220840 7438824 ~ 7439461 (-)
G217050 NA non-coding upstream 272153 7490137 ~ 7494279 (-)
G216878 NA non-coding upstream 295379 7513363 ~ 7513944 (-)
G216931 NA other downstream 41774 7164095 ~ 7165401 (-)
G216408 NA other downstream 850664 6356017 ~ 6356511 (-)
G216093 NA other downstream 1655072 5489557 ~ 5552103 (-)
G215935 NA other downstream 2134066 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 2594283 4563687 ~ 4581278 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035963 ogg1 coding NC_007119.7 CM002892.2 46386601 ~ 46406382 (+)