XLOC_009626 (cyb5r4)


Basic Information

Item Value
gene id XLOC_009626
gene name cyb5r4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3067134 ~ 3096745 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019323
AGGCAAAATCAATTTTAACTGCACCTGCTTTCAGAATACAACAACACATTGCATTAGTTTGATCTGATTGTTGATTGAGGGACATATTTTACTCTGGAATGGTAGAAGAAGATGGTATGGACttggaggaggaagaagaggaagatTATAGATCAGAAAGCAGAAGGAAAGCTTCAACAGTCTTTTCTGTCATCGCCAGTGTTTTGTCTGGGAACTGGGCTTGTTTTAAAGTATCAGAGATGCTGAATGTCCCATCTCAGGCTTTCCCTGCTGCTGGATCCCAGCAGAGAGTCGCGCCAGCCGGACAGTCCAGAAACAAGGTGGTGCTGAAGCCTGGTCACAGTTTGCTGGACTGGATCCGACTGACCAAAAGTGGACAGGATTTAACAGGACTGAGAGGTCGACTGATCGAGGTCACAGAAGACGAGCTGAAGAAACACAACACCAAAAAAGACTGCTGGACGTGCATTAGAGGTATGGTCTATAACTTGAGTGCCTACATGGATTTCCACCCTGGTGGGGAAGAGGAGTTAATGCGGGCTGCTGGGATTGATAGCACTGACCTGTTTGACGAGGTCCACCGATGGGTGAATTATGAGTCCATGCTGAAGGAGTGTTTGGTGGGGAGGATGGCAGTAAAGCCCAGCCCTGCTCTACAAGCTCACACAGAGAAGACTGAGAGCACTCATTTAAACGGTTTATCTGCGCCTCCATCTTTAAGACCAGAGCCTTTATCTGCTCCTCTTCCTGCCAAAGACCATCGTCCTCGGTATGATTGGTTCCAGACAGATGGCACTGTTAATATTGTTGTTTACACCAAGCGAAAGATTCCCAGCGCCGGCTGTGCAGTGGTGGATCTACAGGATGATAATCTCAGAGTAGAGATGCTGTTGGGCAGGATGTCGTACCTTCTCTACTGGCGCCTGTCCAGTAGAGTTCAAGATCATGTTGATGTGCAGACAGCCCACTCTGTTGGAAAGGTTCAGTTGTGCCTGCGCAAATCCGTCAAAGAAAAGTGGACGCAGTTGGGGCAATCGCTTGAACACCATGACACATTCATTCAATGTAAAGATCGAGGGCTCTTCTACAGGGAGTGTGTGCTGCTTTCGAAAACAGACGTCACACACAACACGCAGCTCTTGCGTTTGCAGCTTCCTCCAGGGTCACGTATGCAAGTTCCTGTGGGAAGACACGTCTACCTCAAAACGTCTGTCCAGGGTACGGATGTTGTGAAACCCTACACAGCAGTGGATCAGATGCTAATACCTCCCTCACAGTCCAGTGCTGAAGTGGGCTCAGACATACATCTCATGATAAAGGTCTATCCGGATGGAGTGTTGACCCCGCACATCGCCAACCTTCCTATTGGAGCGTCCCTGTCTGTAGGAGGCCCTGAAGGCTCCCTTACTCTGCGAGTCCTACGGGATGTCACTCATCTCTACATGTTAGCAGCGGGCACAGGATTCACACCCATGGCTCGTCTCATCCGGCTGGCCCTGCAGGAATTCACAGTGATCAGaaaaatgaaGCTGATGTTCTTCAACCGGCAGGAGAGAGACATACTTTGGCAGTCACAACTGGATGAATTATGTACAAAAGAGGAAAGATTTGAGGTGCAGCATGTTCTCTCAGAGCCTGCAGACTCGTGGACGGGCAGAAGAGGACGGATAGATGCTTGTATGCTGCAGAACTTCCTGGAGAGGCCAGAAAACTCCAAGTGTTTAGTGTGCGTGTGCGGCCCTGCTGGATTTACAGAGTCAGCAGTGCAATTGGTCAGACAGCTGGACTTCAGTGAAGAGGAACTCCATGTTTTTCAGGCTTGATTGCGATGTTACagatttctcacacacacactcgcagatTTTTTCTATGCATATATAAAAAGCACTTTCCAATGAAAAGAAAACCTCTCATGAAGCTGCAACACTTGTCGTCTTTGTTTGTGGGAATCCAATGCATATAGACTCAAAACTAATGCACTTACAGATTGTCTTGAAGCACTATAAGACAACCAGTCCATCAATCAGAGTTCAATCAAACGCATCCTAACATTTCATTCCAGAAGCGGCTCAAATATTAGGACGTTTAAGACAGACGCCTTAAGCAGGACAACTCTGCAACATTAAAACAGATGATCTATTATGCTGTCCACATGTTTACCGACATCCTGCAAGGACTTGAGAGGTTTGGAGCAATATCGTTCTGTAAATCAATGCGACTAAAACATGATGTACTGTTGGAAGCAAATGATTTATAACATAGCAGTAAACCTGAATGCAGGACAAGTGCAGTCTCCACTGTTTGTAAATGCTAATTCGACTGCCACATGCTGTTTTCTTAACAGTGTAGATGATGTACTGTAATATGGTTTGTACCTCTAGTGCTGTTGAATCTCGTGGAATGCTGTATTTCTGAGGTCTATCACGGGTCTGATGACGGTTTTGGGAGGGGATGAAAACTGTTCTAGCACAGCACTCTGTGTTAAACCAGCAGACCAGGCTGTTTGTTGTACGCTACTTTAGATAAAATGCGAAGCTGagatctaaatatttatttattgatgtaaaCTCTTGACTGTAAAACCCAGTGATATTGATTTGACAATTAATGGCTTCCAACAGAGGTGATTGGTCGTTTCATAATTAAATGTTTCACT
>TCONS_00019324
ATGCTGAATGTCCCATCTCAGGCTTTCCCTGCTGCTGGATCCCAGCAGAGAGTCGCGCCAGCCGGACAGTCCAGAAACAAGGTGGTGCTGAAGCCTGGTCACAGTTTGCTGGACTGGATCCGACTGACCAAAAGTGGACAGGATTTAACAGGACTGAGAGGTCGACTGATCGAGGTCACAGAAGACGAGCTGAAGAAACACAACACCAAAAAAGACTGCTGGACGTGCATTAGAGGTATGGTCTATAACTTGAGTGCCTACATGGATTTCCACCCTGGTGGGGAAGAGGAGTTAATGCGGGCTGCTGGGATTGATAGCACTGACCTGTTTGACGAGGTCCACCGATGGGTGAATTATGAGTCCATGCTGAAGGAGTGTTTGGTGGGGAGGATGGCAGTAAAGCCCAGCCCTGCTCTACAAGGTTTATCTGCGCCTCCATCTTTAAGACCAGAGCCTTTATCTGCTCCTCTTCCTGCCAAAGACCATCGTCCTCGGTATGATTGGTTCCAGACAGATGGCACTGTTAATATTGTTGTTTACACCAAGCGAAAGATTCCCAGCGCCGGCTGTGCAGTGGTGGATCTACAGGATGATAATCTCAGAGTAGAGATGCTGTTGGGCAGGATGTCGTACCTTCTCTACTGGCGCCTGTCCAGTAGAGTTCAAGATCATGTTGATGTGCAGACAGCCCACTCTGTTGGAAAGGTTCAGTTGTGCCTGCGCAAATCCGTCAAAGAAAAGTGGACGCAGTTGGGGCAATCGCTTGAACACCATGACACATTCATTCAATGTAAAGATCGAGGGCTCTTCTACAGGGAGTGTGTGCTGCTTTCGAAAACAGACGTCACACACAACACGCAGCTCTTGCGTTTGCAGCTTCCTCCAGGGTCACGTATGCAAGTTCCTGTGGGAAGACACGTCTACCTCAAAACGTCTGTCCAGGGTACGGATGTTGTGAAACCCTACACAGCAGTGGATCAGATGCTAATACCTCCCTCACAGTCCAGTGCTGAAGTGGGCTCAGACATACATCTCATGATAAAGGTCTATCCGGATGGAGTGTTGACCCCGCACATCGCCAACCTTCCTATTGGAGCGTCCCTGTCTGTAGGAGGCCCTGAAGGCTCCCTTACTCTGCGAGTCCTACGGGATGTCACTCATCTCTACATGTTAGCAGCGGGCACAGGATTCACACCCATGGCTCGTCTCATCCGGCTGGCCCTGCAGGAATTCACAGTGATCAGaaaaatgaaGCTGATGTTCTTCAACCGGCAGGAGAGAGACATACTTTGGCAGTCACAACTGGATGAATTATGTACAAAAGAGGAAAGATTTGAGGTGCAGCATGTTCTCTCAGAGCCTGCAGACTCGTGGACGGGCAGAAGAGGACGGATAGATGCTTGTATGCTGCAGAACTTCCTGGAGAGGCCAGAAAACTCCAAGTGTTTAGTGTGCGTGTGCGGCCCTGCTGGATTTACAGAGTCAGCAGTGCAATTGGTCAGACAGCTGGACTTCAGTGAAGAGGAACTCCATGTTTTTCAGGCTTGA

Function

symbol description
cyb5r4 Predicted to enable cytochrome-b5 reductase activity, acting on NAD(P)H and heme binding activity. Predicted to be involved in generation of precursor metabolites and energy and superoxide metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in blood vasculature. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CYB5R4 (cytochrome b5 reductase 4).

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-225 Predicted to enable cytochrome-b5 reductase activity, acting on NAD(P)H and heme binding activity. Predicted to be involved in generation of precursor metabolites and energy and superoxide metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in blood vasculature. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CYB5R4 (cytochrome b5 reductase 4).

Ensembl:

ensembl_id ENSDARG00000020898

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019323 False 2656 mRNA 0.46 17 3067134 3096745
TCONS_00019324 True 1548 mRNA 0.51 15 3068080 3095912

Neighbor

gene id symbol gene type direction distance location
XLOC_009625 NA coding upstream 8043 3053424 ~ 3059091 (+)
XLOC_009624 CABZ01043952.1 coding upstream 39894 3004422 ~ 3027240 (+)
XLOC_009623 lars2 coding upstream 76458 2899611 ~ 2990676 (+)
XLOC_009622 clec3ba coding upstream 222939 2840775 ~ 2844195 (+)
XLOC_009621 FEZ2 coding upstream 233598 2820340 ~ 2833536 (+)
XLOC_009627 NA coding downstream 39413 3136158 ~ 3137243 (+)
XLOC_009628 NA coding downstream 50517 3147262 ~ 3149817 (+)
XLOC_009629 NA coding downstream 86004 3182749 ~ 3192150 (+)
XLOC_009630 wdr21 coding downstream 88796 3185541 ~ 3189799 (+)
XLOC_009631 CABZ01052320.1 coding downstream 256756 3353501 ~ 3353617 (+)
XLOC_009620 CU896588.1 non-coding upstream 337645 2729373 ~ 2729489 (+)
XLOC_009616 LO017875.1 non-coding upstream 782960 2284056 ~ 2284174 (+)
XLOC_009615 NA non-coding upstream 891083 2121671 ~ 2176051 (+)
XLOC_009613 NA non-coding upstream 961578 1776515 ~ 2105556 (+)
XLOC_009632 NA non-coding downstream 361470 3458215 ~ 3461793 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_01938179_01949512 NA coding CI01000065 null 1938085 ~ 1950751 (+)