XLOC_009633


Basic Information

Item Value
gene id XLOC_009633
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3591411 ~ 3593405 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021676
acagcttTAAATAGAATATATGAATATGACACATGTACGCAAACAACCAGCATTGTGCAGCAACACTGACCAATTAAGGGACGCTGTATTGCCCTGTTATGCCATTCCCATCTGTCTATCCCCAGAGGAAAACACGGGAAGAGCTCGCTGTCTGTCTGGAATGAGTCTGACGGATACGCATGATCTGCCCCTTAAACTCAATCTCGCCGTGATTGATAACTTCCAGTATGGAGATTATAGGAGAAAATTGACTAACGCACTTCTGCCCTATATTTACTTATGAATGCAATATAAAGCTGGGTTTAGTGGCTCTGTTGTTAGATATACTCTCATTTTCTCTTCTCGGTGTTTGTGATTGAGAATTGTGTTCTCTATCATTTGCAGGAAACTATACCAGAAAATAcgctaaaaataaacaagtgacaCATTCGCAGTTTTCCTACTTattgtaaaaaattgtaaaaaaaaaaaaatgtaggcaaCTTGCTGGAGAAGCTGCGCAAGCCTAATGATCTGAAGGTGAGTCAACTTAGTATTAAaacaacattgtaaaaaaaatgactCAACTTGCTGGACAGCTTTTTTGAGTCGACAactctaataaaaaaaacaacaacgacaacttaaaattgtaagacaACTTGCTAGAGAGCCTTTTTTTGAGCTGACTCAGCTTAAATTgattcaaaaaaatttttttgtcaactttaaaaaaatatgcacaGCCTTATCATTTAAAGTTGGGTCAACTTCGTAATAACATTAGCAttaactcaacttaaaattgtaagacaGCTTGCTAGAGAgccttttttgagttgactcaacttaagttgattcatctacagcacaggtgtcaaactcagttccaaaagggccgcagctctgcacagtttagtttcaaccctaattaaacacacctgatcaaagtaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaattgagtttgacacccctgatctacaggCTTAAAATTTAGTCAACTCAAAAAACCTGTTCAGCCTTTAtgattttaagttgagtcaatttaatatttatttttttgtacataaacattgtaaaaaataaataaacattgatttaacttaaaattgtaaCACAACATGCTGGacagcttttttgagttgactcaacttaaattgaTTCACCTACAGGCTTGAaattgagtcaactcaaaaaaaccTGTTCAGCCTTATGATTTcaagttgagttaact

Function

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0009880 embryonic pattern specification biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0007379 segment specification biological_process
GO:0000578 embryonic axis specification biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021676 True 1299 lncRNA 0.36 2 3591411 3593405

Neighbor

gene id symbol gene type direction distance location
XLOC_009632 NA coding upstream 129618 3458215 ~ 3461793 (+)
XLOC_009631 CABZ01052320.1 coding upstream 237794 3353501 ~ 3353617 (+)
XLOC_009629 NA coding upstream 399261 3182749 ~ 3192150 (+)
XLOC_009630 wdr21 coding upstream 401612 3185541 ~ 3189799 (+)
XLOC_009628 NA coding upstream 441594 3147262 ~ 3149817 (+)
XLOC_009634 NA coding downstream 64922 3658327 ~ 3659417 (+)
XLOC_009635 NA coding downstream 216189 3809594 ~ 3815081 (+)
XLOC_009636 NA coding downstream 334661 3928066 ~ 3948317 (+)
XLOC_009637 zc3h12a coding downstream 389185 3982590 ~ 4001743 (+)
XLOC_009638 CR391998.1 coding downstream 461926 4055331 ~ 4071526 (+)
XLOC_009627 NA non-coding upstream 454168 3136158 ~ 3137243 (+)
XLOC_009640 NA non-coding downstream 539132 4132537 ~ 4175024 (+)
XLOC_009642 NA non-coding downstream 722764 4316169 ~ 4316607 (+)

Expression


Co-expression Network