XLOC_009635


Basic Information

Item Value
gene id XLOC_009635
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3809594 ~ 3815081 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019327
CGGGGACTCTGAAAGCAGGCAGGATGAGCTGGTAGGGAGCAGGACCTGAGGAGCAGCTCTGACGGGTCGTGAGATCTCTGAGGAGACCCCATCTCATGGCCGATGAGCAATTCATCTGGAGTTAATGTGCTGCAGCTGTGCTCTAATGAGCTGAGGCCAGAGGAGAGACTCCACACCGCTGCGACACGCTCTGCATTCATCACTTCGACTCCTCCGTTTCACACATCCAAAACCTGGATATCACACCATCAGGCCACACGGGTCTCACACTGTCCACAGCTCCAACGTCACGTCTGTGTTTCTAGATGTCGGATTTCAGATGCACCGCTTTTCTCCTCTTAATCGTCCCTCATTCCCTTCCCTGTGATGGACACACGTGTGTTTTTTCCTGTCAGCAATGAACAGTAATCCTACATGAACACAGACAGTTCACACACCAGTCAAGCCTGCATGGCTGATCTGAAGAGCTCTGAACTAACAACTCGAACAGAGCATTACTGATTTAAGTACCGTACAGTCATCAGGGACACCATGATCTCATTAGTATTCATAGCTATTTGTATGTTAAGTGCCATTCGAGTGCATACTGTacttgtgtttgtatgtttgccATTGTATATCTAAAAAGCTACAGTGTTTTATGGAGGCCTTGTTGCAATTGTATATGTCAGTACTgagtaatgttatttattttttaagatttgaTTCAGGGTTATTGCATATGATTATGTATCAATTGCAATTGTTAGTATGTGATGTGAACACTCAAAAATATgtatgctgtttgttcaaactacctatttaaaatgagctgaaacaacacaattcttgaggtttttttatgttcaattcacttaaatttgtataaaaaaataaaaaaaactaataagctattttaattccttcat

Function

GO:

id name namespace
GO:0044088 regulation of vacuole organization biological_process
GO:0000045 autophagosome assembly biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:1905037 autophagosome organization biological_process
GO:1902116 negative regulation of organelle assembly biological_process
GO:2000785 regulation of autophagosome assembly biological_process
GO:1901097 negative regulation of autophagosome maturation biological_process
GO:0016242 negative regulation of macroautophagy biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0070985 transcription factor TFIIK complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019327 True 908 lncRNA 0.42 2 3809594 3815081

Neighbor

gene id symbol gene type direction distance location
XLOC_009634 NA coding upstream 150177 3658327 ~ 3659417 (+)
XLOC_009633 NA coding upstream 216189 3591411 ~ 3593405 (+)
XLOC_009632 NA coding upstream 347801 3458215 ~ 3461793 (+)
XLOC_009631 CABZ01052320.1 coding upstream 455977 3353501 ~ 3353617 (+)
XLOC_009629 NA coding upstream 617444 3182749 ~ 3192150 (+)
XLOC_009636 NA coding downstream 112985 3928066 ~ 3948317 (+)
XLOC_009637 zc3h12a coding downstream 167509 3982590 ~ 4001743 (+)
XLOC_009638 CR391998.1 coding downstream 240250 4055331 ~ 4071526 (+)
XLOC_009639 inpp5b coding downstream 263159 4078240 ~ 4131804 (+)
XLOC_009640 NA coding downstream 317456 4132537 ~ 4175024 (+)
XLOC_009642 NA non-coding downstream 501088 4316169 ~ 4316607 (+)
XLOC_009643 NA non-coding downstream 515878 4330959 ~ 4335864 (+)
XLOC_009644 NA non-coding downstream 607540 4422621 ~ 4427294 (+)

Expression


Co-expression Network