XLOC_009636


Basic Information

Item Value
gene id XLOC_009636
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3928066 ~ 3948317 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019328
AGCATGACCGCCAGCGTGCCCAGGTGATGAATGGCCAGAACTGGATAAAGTACACAGTAATAACCTCCAGGCAACCTGCAGCACAACGAGGCCTGTGCTGCGGTGTTAATGTGTCCCGTCGGGTCAGCAGGACGCTCTGGCTCCATCCGCACCGGCTGCAGCAGGATCAGGCTCCTCAGGCCCAGCGTGATGCTGTTTCGCTGCGGTCTGAAAGCATGCTGCCTTCCCTCTAACGCAGATCTGTGACAGCCAGCGGGACCCTGGCACTGACCCCTATAAATGGACGGCTGTTTGGTGTtgaaagatgattttttttaatatgactaATAAAAATGACTATAATTGCTTCATCCATGGAAATGTTTTGCGATAACGACCCTGGTCTAGTTGCCTAAAATTGTGTAAAGCCAAACAGTTtaaatataaacagttgaaggcaaaattgttAGTCCTCATGGAAAAATTTTGAAAAACACTTTGTTTTCACAGTAGTtttaaacactcaccggccattttattcgGTACACCTTGATATTACTGGGTTGgacaccttttgccttcagaactgctttaatccttgtggcatagattaaacaaggtactggaaatattcctcagagattttgctccatattgacatgatagcatcgcacagttgctgcagatttgtcggctgcacatcctgTTCcg
>TCONS_00021872
GTGATGAATGGCCAGAACTGGATAAAGTACACAGTAATAACCTCCAGGCAACCTGCAGCACAACGAGGCTGGTGAATGTGGGCCCGGAGTGCCCCCTGCTGCCAGGGAGCGGGATGGCTGACTCCATGCTCCACTGCTGAGAGAGAAACCAAGCATGAAATCACTCTGGCACCGGGCCCGCCATCCCCAGCCAAAGGCCCTCTTCCTGAGCGCCATCTGGAGCCTCCGAGGGATGAGGACTGGACGGCTGGTCCGACTGGGCTCCATCTCCATAAACAGAGCCCTAAACCTGAGGGACGTGACCACACAGGGCGCAGCTCAAAGACTCGTGCTCCCTCTCTCCACATGCCGGGATGTGCCCTTTAGGGTTGTATATTTCACATCTGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019328 False 690 lncRNA 0.46 2 3928066 3932047
TCONS_00021872 True 389 lncRNA 0.58 2 3928089 3948317

Neighbor

gene id symbol gene type direction distance location
XLOC_009635 NA coding upstream 112985 3809594 ~ 3815081 (+)
XLOC_009634 NA coding upstream 268649 3658327 ~ 3659417 (+)
XLOC_009633 NA coding upstream 334661 3591411 ~ 3593405 (+)
XLOC_009632 NA coding upstream 466273 3458215 ~ 3461793 (+)
XLOC_009631 CABZ01052320.1 coding upstream 574449 3353501 ~ 3353617 (+)
XLOC_009637 zc3h12a coding downstream 34273 3982590 ~ 4001743 (+)
XLOC_009638 CR391998.1 coding downstream 107014 4055331 ~ 4071526 (+)
XLOC_009639 inpp5b coding downstream 129923 4078240 ~ 4131804 (+)
XLOC_009640 NA coding downstream 184220 4132537 ~ 4175024 (+)
XLOC_009641 yrdc coding downstream 230632 4178949 ~ 4190726 (+)
XLOC_009642 NA non-coding downstream 367852 4316169 ~ 4316607 (+)
XLOC_009643 NA non-coding downstream 382642 4330959 ~ 4335864 (+)
XLOC_009644 NA non-coding downstream 474304 4422621 ~ 4427294 (+)
XLOC_009647 NA non-coding downstream 610794 4559111 ~ 4559912 (+)

Expression


Co-expression Network