XLOC_009637 (zc3h12a)


Basic Information

Item Value
gene id XLOC_009637
gene name zc3h12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 3982590 ~ 4001743 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019329
GCTAAAACACTTTCTTGCCTCACAGTCTGGACTCATCATTTGGAGAATATGTCTTTTTCACAGACGGGAACAGCATGTCAGAGCAGCATATGGACCACGCAGAAGCTCATGCACTGATAACCCCCAAAACATCACACATCCATCCGGCATCAATATGCAGTCCAGGTGTTTCCATCAACCCACAGGCCTGGGCCAGGACTCACACGACCTCCTCAACCTGCAGATGAAGGTGGACTTCTTCCGAAAGCTGGGTTACTCTCCGCAAGAAGTGAAAGCTGCTTTGAGGAAGCTCGGCCTAGGGACGGACACTAATGCGGTTCTGGGGGAGCTGGTTCGTTCAGGGGCGAAGGCTGTCCCCCCTTCTGTTTCTAATAGTGATGATGGGGGCTCAGGATCATCCCATCGGGGAGGGGGCTCATCTAGAGGACAGGGATCTACGTTGGATGACGCCACTGAAGCTGAAAGTGACCTGAAGCCTATAGTTATTGATGGCAGCAATGTGGCTATGAGTCATGGGAACAAGGAAGTGTTTTCGTGCAGAGGGATTGAGCTGGCAGTCAACTATTTCCTTGACCGAGGGCACCGAAATATCACCGTGTTTGTGCCTTCCTGGAGAAAAGAGCAGCCCCGGCCTGATGTACCTATTTCAGATCAGCATATTTTGGGAGAGCTGGAAAGGAAGAAGTTTCTAGTGTTTACACCTTCACGACGCGTCGGAGGAAAGCGTGTGGTCTGCTACGATGATCGTTTTATCGTCAAGCTCGCTCATGATCTAGATGGCATTATCGTGTCTAATGACACGTACCGTGACCTGCAAAGTGAACGTCCGGAGTGGAAGCGGTTCATCGAGGAGAGATTGCTCATGTACTCCTTTGTCAATGACAAGTTCATGCCACCTGATGACCCTCTCGGCCGTCATGGTCCCAACTTGGATAATTTTCTCCGGAAAAAAGCAATGTTGATTGACCACAAGCGTCAACTCTGTCCGTATGGAAAAAAGTGCACATATGGGATCAAGTGTAAGTTCTACCACCCAGAGCGCACTAATCAATCCCAGCGTTCTCTAGCCGATGAGCTTCGGGAAAATGCCAGACTGTCTG

Function

symbol description
zc3h12a Predicted to enable endoribonuclease activity and mRNA binding activity. Predicted to be involved in 3'-UTR-mediated mRNA destabilization; RNA phosphodiester bond hydrolysis, endonucleolytic; and nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000005271

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019329 True 1100 mRNA 0.50 6 3982590 4001743

Neighbor

gene id symbol gene type direction distance location
XLOC_009636 NA coding upstream 34273 3928066 ~ 3948317 (+)
XLOC_009635 NA coding upstream 167509 3809594 ~ 3815081 (+)
XLOC_009634 NA coding upstream 323173 3658327 ~ 3659417 (+)
XLOC_009633 NA coding upstream 389185 3591411 ~ 3593405 (+)
XLOC_009632 NA coding upstream 520797 3458215 ~ 3461793 (+)
XLOC_009638 CR391998.1 coding downstream 53588 4055331 ~ 4071526 (+)
XLOC_009639 inpp5b coding downstream 76497 4078240 ~ 4131804 (+)
XLOC_009640 NA coding downstream 130794 4132537 ~ 4175024 (+)
XLOC_009641 yrdc coding downstream 177206 4178949 ~ 4190726 (+)
XLOC_009642 NA coding downstream 314426 4316169 ~ 4316607 (+)
XLOC_009643 NA non-coding downstream 329216 4330959 ~ 4335864 (+)
XLOC_009644 NA non-coding downstream 420878 4422621 ~ 4427294 (+)
XLOC_009647 NA non-coding downstream 557368 4559111 ~ 4559912 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_02806198_02813320 NA coding CI01000065 null 2806198 ~ 2813722 (+)