XLOC_009639 (inpp5b)


Basic Information

Item Value
gene id XLOC_009639
gene name inpp5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4078240 ~ 4131804 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019331
CCATCCTACCAAGTTTGGTGTCACTGCAATCCCTGAAGCCAGAAGAATATTGGGATATCTGAAACAAAAGAAGACGACAAAAGAAAATATAAGTGATATTCCTAGCGTGTCCGGTGAAATGATCAATAACCGACAGCAGAAAGTCTTGTAAGACTGCAGTTTAGGGTGGTTAGCTGAACTCTTGCGTGCTGCTGCGTGGCATGAGGGAGGTTTCGGACGGGAAGTTTCATCTAAACTGAAGGAGGACACATGGAGACTGTCAAAACCCCACAATCTTTCAGCAACCACCGCACACTTTCAGagaaataatgactgtttttacgACACATCTCGCGACTGAAGTGTCGCTTGCAGACTCGCGCTGAATAATGGACCAGTCCGTGGCGATTCAAGAGACTTTGGCCGAAGGAGAAAGCTGCACTATAGCTGTGGAGTGTGTTTCCCTGCTGAATGACGTAAGAGACAGCAAACTGATAGGACTGGTGCGGCAGAACAAGGAGCATGCGTTGTTTATATATTCCCATCGAAGGATGGCCATCACTGGTGAGGATGTCACTCTGGGCCAAATCATTCCCATTTCTTATGACTTTTCGGTTGTTGAAGTTTCTTCTCCAGATGAGCTTGCCGTTGTTGGTGCAGATACTCGAGTGCGGGTAACTTTTctggaggaggagctggagctgaAGTTGCCGTTTGGTTCTCACACCCGTCTCTTCCTCAGTGAAGTGAATCGGGCCTGGAGCGATGTCTGTCAGCAGTATCCAAAAGAAGAACCCAAGTTTGACTGGCTCACCAAGTACCGTAAAGTGTCAAAAGGGGCAAGATCACTGAGAAAGTCAATTGGAGCAACGACTGTCAAGATGAGTCAGAT
>TCONS_00019332
ATGGACCAGTCCGTGGCGATTCAAGAGACTTTGGCCGAAGGAGAAAGCTGCACTATAGCTGTGGAGTGTGTTTCCCTGCTGAATGACGTAAGAGACAGCAAACTGATAGGACTGGTGCGGCAGAACAAGGAGCATGCGTTGTTTATATATTCCCATCGAAGGATGGCCATCACTGGTGAGGATGTCACTCTGGGCCAAATCATTCCCATTTCTTATGACTTTTCGGTTGTTGAAGTTTCTTCTCCAGATGAGCTTGCCGTTGTTGGTGCAGATACTCGAGTGCGGGTAACTTTTctggaggaggagctggagctgaAGTTGCCGTTTGGTTCTCACACCCGTCTCTTCCTCAGTGAAGTGAATCGGGCCTGGAGCGATGTCTGTCAGCAGTATCCAAAAGAAGAACCCAAGTTTGACTGGCTCACCAAGTACCGTAAAGTGTCAAAAGGGGCAAGATCACTGAGAAAGTCAATTGGAGCAACGACTGTCAAGATGAGTCAGATGAAGAAAGCAGAGAGAGCACACACAGCCAACAGCAGCGCACTGAAGAAAGAGGACGAGAGCGCCAGAGGAGATGCACTGCAAAGTCAGGAAAAGGTGAAGGGTGAGGTGAAAGATGACCTGATCCGAAACTCCCAGCCCGTCCTGTCTAATAAAGCACAGATGCTCGGGATGCCGCAGTTCGGCCTGCGGGATAACCTCATCAAATGTGAGCTCCTCAAAAACGAGGACGCCTACACCTACATCGAGAACTACAGCTTCTTCTTGGGAACCTACAATGTGAATGGCCAGACTCCAAAAGAGAGTCTCAGTCCATGGCTGGCATCCACCGCCAGCCCTCCAGACTTCTACCTGATTGGTTTCCAGGAGCTGGATCTCAGCAAGGAGGCGTTTCTCTTCAATGACACTCCTAAGGAGCCCGAGTGGATGTTAGCCGTCTATAAGGGTCTCCATCCAGATGCCAAGTATGCTTTAgtGAAGCTGGTGCGGCTGGTGGGAATCATGCTGTTGTTTTACGTGAAGGCCGAACATGCGCCTCATATCTCTGAGGTGGAGGCTGAGACCGTTGGCACAGGCGTTATGGGACGGATGGGTAATAAAGGCGCAGTTTCCATCCGCTTCCAGTTCCACAACTCGGACATCTGTGTGGTGAACTCGCATCTCGCCGCACACACCGAAGAGTTCGAGCGTCGCAATCAAGACTTTAAAGACATCTGTCGCAGAATTCAGTTCAGACAGGAGGATCCCACATTACCACCCCTCACCATCCTCAAACACAATATCGTGTTGTGGCTGGGAGATCTGAACTACCGAATCAGTGATCTCGAAGTGGATCATGTGAAGGACCTGATCTCTAAAAAGGATTTTGAGACCCTGCATACTTATGACCAGctgaaGCGGCAGATGGATGAGGAAGTTGTGTTTGTTGGCTTCACTGAGGGAGAGATTGATTTCCAGCCCACATACAAATATGACACTGGATCAGATCAATGGGACACCAGTGAGAAGTGTCGAGTTCCAGCGTGGTGCGACCGCATCCTGTGGAGGGGGAAGAGCATTAAACAGCTTCATTACCAGAGTCACATGACCCTGAAAACCAGTGACCACAAACCCGTCAGCTCTCTGCTAGAGATCGGGATCAAGGTGGTGAACGAGGAGTCTTACAAGCGCACGTTTGAGGAGATCGTGAGGCAAATCGATAGACTGGAGAACGACTGCATCCCTTCAGTATCTCTGTCTGAGAGAGAGTTTCACTTCCAGGACGTGAAGTTCATGCAGCATCAGGCGAGGACTGTGACGGTCCATAATGACGGACAGGTGCCATGTCAGTTTGAGTTCATACAGAAGCTGGACGAGCCTGCGTACTGCAAGCCCTGGTTAACAGCAAACCCAGCTAAAGGCTTTCTGGCCCAGGgtgCCAGTGTGGACATCGACCTGGAGGTGTTTGTGAACCGTCACACAGCCCCAGAGCTGAACGCAGGCCTGCAGCAGCTGGAGGACATCCTGGTCCTGCATCTGGAGCGTGGTAAAGATTACTTCATCTCCATCACCGGCTCCTACCTGCCCAGCTGCTTCGGCTCGTCCCTCAGCGCTCTGTGTCTGCTGAGAGAGCCCATCCAGGACATGCCTctggagagcatccgagagctgAGTGTGAAGTCAAATAGTCCAGTTATTGACTCTGCCGATAAACCTCAAGAAATCCCCAAGGAAATCTGGATGATGGTGGACCATCTCTTCCGTTATGCAAAGAAACAGGAAGACCTCTTTCAACAGCCCGGCCTGCGCAGCGAGTTCGAGGAGATTCGGGATTGTTTGGACACGGGCTGCTTAGACACTCTTCCTGGCAGTAATCACTCAGTGGCTGAAGCTCTGCTGTTGTTCCTTGATGCTCTTCCTGAACCCGTGATTCCCTTCTCCTTCTACCAGCAGTGCTTGGATTGCTGCTCCGACAGCAGCCACTGTCGACAGATCATTTCAATGCTACCTCAGTgccataaaaatgtttttaactatTTAACGGCCTTTCTTCAAGAGTTGTTGAGGCACTCCGCATACAATCGGCTGGACGTCAATGTTGTAGCGCCGATCTTTGCTGGCCTTCTACTGAGGTCCCCTGACAAGCAAGATAtcaatgaaaaaagaaaagtgaaGGAGTTTTTCCAGCATTTCTTGGTCCAGACTTCCTCTGACAGAGACATTCATGAGAAATCACCTGAATAATGTTCTGCGTCATGCTGCCTTCATTATCTTAAAGCCCTTGTTTTTCCAGCGGGATCATGTTGACCGACTTTATTAGCGGTCATTTAATTCAGCGCATTTTAAACAGTTATGgaaactaatttgttttattacacaGCAGATGAGAAacgtttatttaattaaaaactatttgTATTTTGATGTTTGTACATACAAAAACAGCAGTTCTTTTATAATAAATCTAAACCATTATAACAGTCTCGGCCTCTgccttttcctttcattttaTAATCAGTTCCTCATGTTGGATGCGCCGTCATTTACaggtttttattttgaattatgttTTACCACATGcctttaattttattacatatcTATTTTACAAATATCAGACAATGTCAACCTGACAGTAATGTTTTAATAagattcattcgttttcttttcggcttagtccctttattaatctggggtcgccacagcagaacaaaccgccaaattatccagcatatggtttactcAGGGcatgcctttctagctgcaaccctatgactgggaaacacccatacactcttgcattcacacacatacactacggccaattttagcttactcacttctcctgtaccgcatgtgtttgggctttgagggaaaccggagcactcaaaGGAAATCCACGCCatcacggagagaacatgcaaactctgcacagaaataacgggac
>TCONS_00019333
ATACAGGATGAGCAGCAGATTGCTGTTTGattttcatcatttattatttcataaactaTCAGAAAGGGACACATCTGACTTCTCAAAAGGGAAATATGCTTCAGGAAAGAGCTGTTTGATCATCGGGTGAACGCTGATGGCGGGTTTCAGGAGCTCTAAAGATGCACGCGTTAAcagaaaaaatctaaaaaatttgCAAGATGTCTGTCAGCAGTATCCAAAAGAAGAACCCAAGTTTGACTGGCTCACCAAGTACCGTAAAGTGTCAAAAGGGGCAAGATCACTGAGAAAGTCAATTGGAGCAACGACTGTCAAGATGAGTCAGATGAAGAAAGCAGGTGAGCTGTGCATTTTGCTTTagagtaaatgaaaataaatcaaattaaaatatgtatttatttatttaatcaaatattttaaaaatgtgcgtGCGTtgttgccttagtgtcccaccagtgcctatatacagccaaatcgcactgctacttgtgtgatattgcatttatacaacagtttgatggcataatcgtgtgtataaaaaaagaaaatcaaacatggagagtctgaaaaataattttgtacaaggaactactttcctctcatatctgcagctgactgtcagaacagcagaaactgctgCTACTTCagaaacatcactttagagctagtattcgaatgattctctagcgtaatgtctaaagtgatgacaaaacaggtgattttgctcacattttaagattgtgagtagggccagacggaatctgcggacgttttttgctatttttgaggagaattttggtaaaaatctgcggatttctgcggaattattttgggagtatcataactaaaacctaaatatgtgaaataaa

Function

symbol description
inpp5b Predicted to enable inositol-1,4,5-trisphosphate 5-phosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pronephric duct morphogenesis. Predicted to be located in early endosome membrane and phagocytic vesicle membrane. Predicted to be active in cytosol and membrane. Orthologous to human INPP5B (inositol polyphosphate-5-phosphatase B).

GO:

id name namespace
GO:0046855 inositol phosphate dephosphorylation biological_process
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0071871 response to epinephrine biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0039023 pronephric duct morphogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0052745 inositol phosphate phosphatase activity molecular_function
GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-228 Predicted to enable inositol-1,4,5-trisphosphate 5-phosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pronephric duct morphogenesis. Predicted to be located in early endosome membrane and phagocytic vesicle membrane. Predicted to be active in cytosol and membrane. Orthologous to human INPP5B (inositol polyphosphate-5-phosphatase B).

Ensembl:

ensembl_id ENSDARG00000103683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019331 False 871 mRNA 0.47 6 4078240 4088460
TCONS_00019332 False 3427 mRNA 0.48 23 4078608 4131804
TCONS_00019333 True 869 lncRNA 0.37 2 4087791 4089002

Neighbor

gene id symbol gene type direction distance location
XLOC_009638 CR391998.1 coding upstream 6714 4055331 ~ 4071526 (+)
XLOC_009637 zc3h12a coding upstream 76497 3982590 ~ 4001743 (+)
XLOC_009636 NA coding upstream 129923 3928066 ~ 3948317 (+)
XLOC_009635 NA coding upstream 263159 3809594 ~ 3815081 (+)
XLOC_009634 NA coding upstream 418823 3658327 ~ 3659417 (+)
XLOC_009640 NA coding downstream 733 4132537 ~ 4175024 (+)
XLOC_009641 yrdc coding downstream 47145 4178949 ~ 4190726 (+)
XLOC_009642 NA coding downstream 184365 4316169 ~ 4316607 (+)
XLOC_009643 NA coding downstream 199155 4330959 ~ 4335864 (+)
XLOC_009644 NA coding downstream 290817 4422621 ~ 4427294 (+)
XLOC_009633 NA non-coding upstream 484835 3591411 ~ 3593405 (+)
XLOC_009632 NA non-coding upstream 616447 3458215 ~ 3461793 (+)
XLOC_009647 NA non-coding downstream 427307 4559111 ~ 4559912 (+)

Expression


Co-expression Network