XLOC_009642



Basic Information


Item Value
gene id XLOC_009642
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4316169 ~ 4316607 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00021874
ttttacaacaGAGAAACCTTCTATAATCTTCATAAGGGACCTTATTTGTCATTCAAAGAGGCTCCAGAGAGCCAATCATCTTCCAGCAATCCTTCAGACTATTCTTCTTTCCCGCCTACAGATTAGTCTcgccatggtgtgtgtgtgtgtgaccggtTGCTGGTTGCTCGCGTTACTGCAGGTGGTGGACTGGCGCAACAACTCTCGGTGTTGCGTGAGAATCTCCCCGGTTTGCCTCTCTGACCATCTGCTACATATATAAGCAGACGTTTCTTGTTCTCTTATTTTCTGCATTTAACATTGAGACAACCACGACTGCCCGCCGAGGTAAAAATTTACCTCAGGCGAATGTGTTTCTTGACAGCAGACATGCACTCTCGTGCCACTATtcaagtaaatgaattaattaggCGGGAGACAAAGAAAAGCAGGATTTCAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00021874 True 439 lncRNA 0.45 1 4316169 4316607

Neighbor


gene id symbol gene type direction distance location
XLOC_009641 yrdc coding upstream 125443 4178949 ~ 4190726 (+)
XLOC_009640 NA coding upstream 141145 4132537 ~ 4175024 (+)
XLOC_009639 inpp5b coding upstream 184365 4078240 ~ 4131804 (+)
XLOC_009638 CR391998.1 coding upstream 244643 4055331 ~ 4071526 (+)
XLOC_009637 zc3h12a coding upstream 314426 3982590 ~ 4001743 (+)
XLOC_009643 NA coding downstream 14352 4330959 ~ 4335864 (+)
XLOC_009644 NA coding downstream 106014 4422621 ~ 4427294 (+)
XLOC_009645 ttc29 coding downstream 180695 4497302 ~ 4512795 (+)
XLOC_009646 tfpt coding downstream 215123 4531730 ~ 4540914 (+)
XLOC_009647 NA coding downstream 242504 4559111 ~ 4559912 (+)
XLOC_009636 NA non-coding upstream 367852 3928066 ~ 3948317 (+)
XLOC_009635 NA non-coding upstream 501088 3809594 ~ 3815081 (+)
XLOC_009634 NA non-coding upstream 656752 3658327 ~ 3659417 (+)
XLOC_009633 NA non-coding upstream 722764 3591411 ~ 3593405 (+)
XLOC_009650 NA non-coding downstream 392128 4708735 ~ 4711728 (+)
XLOC_009654 FO722028.1 non-coding downstream 557757 4874364 ~ 4874481 (+)

Expression



Co-expression Network