XLOC_009643


Basic Information

Item Value
gene id XLOC_009643
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4330959 ~ 4335864 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021875
GTAAACTCACACCCTTGATCTGATGGAGAAGACCATGGTGAACAATGCAAATTTACCATTTGTTGGTGCACAGAAGTGTTTTTGGTTacttttctgaatttttttttttttaatgacaggaCCCTTTCTTTTGGAGTaggagagagctccaggatttcctctaaaatgttttaatttgtgttctgactGAAGTTCTCATGGGATTCAcaccacatgaggGATTGGGGAAAACTGCTTAGAAATGTTGGAAAACAAAGATGTGATTCTTGAATCCCGTGGCCAGCCGAGAGATTTGTCGAGTGGTGAGGAGTTGACGCAAGTTCAGGCTGTTGAGAACTCTTCATAGTTCAAGTTGAGCAGCTTTGGAAAAAGTCCTAGACAGAAGTGAGGCGGGAATAAAATCAGGCCCAGATCGGTGAAATGACGGGACTGTTAACGTTTCAGATCCTACTGCACGTGCTGATTTACACTTGTTTAAGAAGGTTGCAAGTTGAGTTGAAACAGGTGAAGTGAAATTGATTTGTTGAAGTAAATATTATGTAGAAATCTtaatatgataaaaatattagGTTTTCTTTATAGAGAttgttcatttaatcattttcttgtcggcttactccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatctctgggaaacatctagacacaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021875 True 735 lncRNA 0.41 2 4330959 4335864

Neighbor

gene id symbol gene type direction distance location
XLOC_009642 NA coding upstream 14352 4316169 ~ 4316607 (+)
XLOC_009641 yrdc coding upstream 140233 4178949 ~ 4190726 (+)
XLOC_009640 NA coding upstream 155935 4132537 ~ 4175024 (+)
XLOC_009639 inpp5b coding upstream 199155 4078240 ~ 4131804 (+)
XLOC_009638 CR391998.1 coding upstream 259433 4055331 ~ 4071526 (+)
XLOC_009644 NA coding downstream 86757 4422621 ~ 4427294 (+)
XLOC_009645 ttc29 coding downstream 161438 4497302 ~ 4512795 (+)
XLOC_009646 tfpt coding downstream 195866 4531730 ~ 4540914 (+)
XLOC_009647 NA coding downstream 223247 4559111 ~ 4559912 (+)
XLOC_009648 LIN28A coding downstream 318469 4654333 ~ 4686245 (+)
XLOC_009636 NA non-coding upstream 382642 3928066 ~ 3948317 (+)
XLOC_009635 NA non-coding upstream 515878 3809594 ~ 3815081 (+)
XLOC_009634 NA non-coding upstream 671542 3658327 ~ 3659417 (+)
XLOC_009650 NA non-coding downstream 372871 4708735 ~ 4711728 (+)
XLOC_009654 FO722028.1 non-coding downstream 538500 4874364 ~ 4874481 (+)
XLOC_009659 NA non-coding downstream 1163410 5499274 ~ 5502699 (+)

Expression


Co-expression Network