XLOC_009645 (ttc29)


Basic Information

Item Value
gene id XLOC_009645
gene name ttc29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4497302 ~ 4512795 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019342
ACGCTGACAAATCTGACAACCAGCAGCATGTCTTCGAAAACTCGGTTTTCTATGATCCACAGTCCTCAGAAAACCAACAGGACAACACCGACATCCAAgTCTTTCCCTCGGTGTAATAAGAAGAATTCCGGCAGTCCTGTTGGAGAGGAACCAAACAAAATGACTGAGACCGAAATAGCACAAATAGGGAAGCCTTTGCGTCAGAATATTTGCGTAGAGATGCTTCGAGACGGCTTTCCACACTCATTTAAGGAGCTGTTCGCACTTCTGCAGCGCTGGGATGAAGAGGACGACGATCCGCTCAAACTGCAGACTCTACAGCTTCACCTCACTCGGGCTGAGGCAGCAGAGAGATCTGAAAAGTATGATGAGGCGTATGAGAACCACATGCTTATGGCCAGGTTTTTCACAGAGGACAAATGGATGAAGCATCATTTCCTTGAGCTGGCACTCCGTTCAGCTCGCAAGGTCATAATGGACTCTGGCAAAAGAGAAGCTGAGGCCAGGTCACTTGTGGGACAAGCTTATTTAGAGAAAGGTGATCTTGAGCTTGCACAAGAGCATTTGGAGGTGTTTTATCAGCTAACCGCAGGCCGAACTTGGCAGGACAGCAACGGCCGGATGCAGCACTCTCGCTCATGTGAAGAGCTCCAGACGGTCTACACGCTGATGGCACAGAGATCTCTGCAGGATCAACAATATGAGCAGGCCATTAAGATGTCTAGAAAGGCCTATACTATTGCTAAAGAGTCGGGAGATCGAGCGCTGGAAGGAGAGGCCGCCTATAGACTGGGTCTAGCCTATCAGAGCACAGGAGACCAGAAGATTGCTATGAAGTTTTTAAGCTCATATATGGAGATCGCCTTGACACTTGAAGACACAGACAGTCTGGGAAGAGCACATGAAGCCATGGCCAAATGTCTGGAGAGTGAAGGCAAAATAACTGAGGCAATTGAATTATGGGAGAAGTATGTTGAGACATGTAAAAGCAGCAAACATGACCAAAACCTGGAGAGAGCCTATATGAACCTCGGACACATCCTCAAATCTCAGaAGCGGTACGGCGAAGCTCGTGTGTATTTTGAGCGCGCGTTTGAGCTTGTCTGTCTTGAGGGTTGTCCGAGGAGAGTGCAGGAAGCTCAGGTGTATGTGGGCATTACTCGTGCGCTCAGCACTTTTCCCGCATATATGAAACTCATACAAGACCAGAACTTAGACGCACTACTCGCCTGGAAGGACAGGCGAGAGGACCGCTTCAGTTCGGCAGCATCAAGTGAGCCAGAGTCAACAGCTCTGTCTAACACTGTCGTTCCATGACTCGCACTCTCTACTGGAAATGAAGAGTGGACTGATGAAATGTCTAAATAAAGTATTGGGTTAATGAGCCCTTTTGGTTTAAAGGGCTCTAATTTTAGTCTTTTAACAAGATGTTAAATAAGTCTGTGACATTTCGTTCCACTGTAGGTCCACGCTTAAACTTAAACTGTATTGTCAACAATATCGTTATCGCAATAAACGCCAAAAC
>TCONS_00019343
CGCATCTTCATACAAAGTAACGTGTCTTGTTATATCTGTCGTTTTTAGCTAAATTATAActtcttttttgttatttaaacttaCTCAGCAGCATGTCTTCGAAAACTCGGTTTTCTATGATCCACAGTCCTCAGAAAACCAACAGGACAACACCGACATCCAAgTCTTTCCCTCGGTGTAATAAGAAGAATTCCGGCAGTCCTGTTGGAGAGGAACCAAACAAAATGACTGAGACCGAAATAGCACAAATAGGGAAGCCTTTGCGTCAGAATATTTGCGTAGAGATGCTTCGAGACGGCTTTCCACACTCATTTAAGGAGCTGTTCGCACTTCTGCAGCGCTGGGATGAAGAGGACGACGATCCGCTCAAACTGCAGACTCTACAGCTTCACCTCACTCGGGCTGAGGCAGCAGAGAGATCTGAAAAGTATGATGAGGCGTATGAGAACCACATGCTTATGGCCAGGTTTTTCACAGAGGACAAATGGATGAAGCATCATTTCCTTGAGCTGGCACTCCGTTCAGCTCGCAAGGTCATAATGGACTCTGGCAAAAGAGAAGCTGAGGCCAGGTCACTTGTGGGACAAGCTTATTTAGAGAAAGGTGATCTTGAGCTTGCACAAGAGCATTTGGAGGTGTTTTATCAGCTAACCGCAGGCCGAACTTGGCAGGACAGCAACGGCCGGATGCAGCACTCTCGCTCATGTGAAGAGCTCCAGACGGTCTACACGCTGATGGCACAGAGATCTCTGCAGGATCAACAATATGAGCAGGCCATTAAGATGTCTAGAAAGGCCTATACTATTGCTAAAGAGTCGGGAGATCGAGCGCTGGAAGGAGAGGCCGCCTATAGACTGGGTCTAGCCTATCAGAGCACAGGAGACCAGAAGATTGCTATGAAGGTGTGTTCGGACTCACTAATTTGCTTTCGACAGTTTTTAAGCTCATATATGGAGATCGCCTTGACACTTGAAGACACAGACAGTCTGGGAAGAGCACATGAAGCCATGGCCAAATGTCTGGAGAGTGAAGGCAAAATAACTGAGGCAATTGAATTATGGGAGAAGTATGTTGAGACATGTAAAAGCAGCAAACATGACCAAAACCTGGAGAGAGCCTATATGAACCTCGGACACATCCTCAAATCTCAGaAGCGGTACGGCGAAGCTCGTGTGTATTTTGAGCGCGCGTTTGAGCTTGTCTGTCTTGAGGGTTGTCCGAGGAGAGTGCAGGAAGCTCAGGTGTATGTGGGCATTACTCGTGCGCTCAGCACTTTTCCCGCATATATGAAACTCATACAAGACCAGAACTTAGACGCACTACTCGCCTGGAAGGACAGGCGAGAGGACCGCTTCAGTTCGGCAGCATCAAGTGAGCCAGAGTCAACAGCTCTGTCTAACACTGTCGTTCCATGACTCGCACTCTCTACTGGAAATGAAGAGTGGACTGATGAAATGTCTAAATAAAGTATTGGGTTAATGAGCCCTTTTGGTTTAAAGGGCTCTAATTTTAGTCTTTTAACAAGATGTTAAATAAGTCTGTGACATTTCGTTCCACTGTAGGTCCACGCTTAAACTTAAACTGTATTGTCAACAATATCGTTATCGCAATAAACGCCAAAAC

Function

symbol description
ttc29 Human ortholog(s) of this gene implicated in spermatogenic failure 42. Orthologous to human TTC29 (tetratricopeptide repeat domain 29).

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-100922-181 Human ortholog(s) of this gene implicated in spermatogenic failure 42. Orthologous to human TTC29 (tetratricopeptide repeat domain 29).

Ensembl:

ensembl_id ENSDARG00000058885

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019342 False 1525 mRNA 0.47 10 4497302 4512795
TCONS_00019343 True 1623 mRNA 0.46 9 4497337 4512795

Neighbor

gene id symbol gene type direction distance location
XLOC_009644 NA coding upstream 70008 4422621 ~ 4427294 (+)
XLOC_009643 NA coding upstream 161438 4330959 ~ 4335864 (+)
XLOC_009642 NA coding upstream 180695 4316169 ~ 4316607 (+)
XLOC_009641 yrdc coding upstream 306576 4178949 ~ 4190726 (+)
XLOC_009640 NA coding upstream 322278 4132537 ~ 4175024 (+)
XLOC_009646 tfpt coding downstream 18935 4531730 ~ 4540914 (+)
XLOC_009647 NA coding downstream 46316 4559111 ~ 4559912 (+)
XLOC_009648 LIN28A coding downstream 141538 4654333 ~ 4686245 (+)
XLOC_009649 mecr coding downstream 182280 4695075 ~ 4707668 (+)
XLOC_009650 NA coding downstream 195940 4708735 ~ 4711728 (+)
XLOC_009636 NA non-coding upstream 548985 3928066 ~ 3948317 (+)
XLOC_009654 FO722028.1 non-coding downstream 361569 4874364 ~ 4874481 (+)
XLOC_009659 NA non-coding downstream 986479 5499274 ~ 5502699 (+)
XLOC_009668 NA non-coding downstream 1882508 6395303 ~ 6421449 (+)

Expression


Co-expression Network