XLOC_009649 (mecr)


Basic Information

Item Value
gene id XLOC_009649
gene name mecr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4695075 ~ 4707668 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019347
ACGACGTCACTACTACAGGCTTTACGGTACCAAAATGGCCGCTCACAGGATAGTAAACATGGATTTTTGATCTCTCGTGTGTTTTTCAAAGATATACGACGACGATATTTTGAAATTGAACGCATAACAGGGGATAAAATGAAACTGCCGTCCGTCGCATCGCTATTAATTCGCGTTTACAGAACAACAGGTCCTGTGTCACACATTCAGAGGATCAGACATGGAGCTGTCCTCAATAAAAACTATTCATCTGTGTCTGCAGTCAAAAACTGCACTGCACTCCTGTACAGGAATCACGGGGAGCCCTCACAAGTTGTCCAGTTGGAGTCTCTGGATCTTCCTCAGGTGGGAGCTGAATGTGTCCTAGTGAAAATGCTAGCGGCTCCCATCAACCCTTCTGACTTAAATATGCTTCAAGGCACATATGCCATCCTGCCTGAGCTTCCGGCAGTGGGGGGCAATGAGGGTGTGGCTCAGGTGATGGAGGTGGGAGACAAGGTCAAAACACTCAAAGTGGGCGACTGGGTGATTCCAAAAGATGCTGGCATAGGCACATGGAGAACAGCAGCAGTTTTAAAGGCTGACGATCTGGTGACTTTACCTAAAGACATTCCTGTACTGTCCGCAGCCACTCTGGGGGTCAATCCATGCACCGCTTATAGGATGCTCACAGACTTTGAGGAGCTCAAAGCAGgaGACACAGTGATCCAGAATGCCGCTAACAGTGGTGTTGGACAGGCTGTTATTCAGATCGCTGCTGCTAAAGGCATTCACACCATTAATGTCATCAGAGACAGGCCGGATCTGCGGCAGCTCTCAGACAGACTGACAGCGATGGGCGCCACACACGTCATTACAGAAGAGACTCTGAGACGGCCAGAGATGAAGGAGCTCTTTAAGTCCTGTCCTCGACCTAAACTGGCACTGAATGGAGTTGGAGGAAAAAGTGCCACAGAACTATTACgccatttacaAAGTGGAGGGAGTTTGGTGACCTACGGTGGGATGGCCAAACAACCAGTCACTGTTCCAGTGAGTGCGCTGATCTTTAAAGACGTGAGAGTAAGAGGTTTTTGGGTGACCCAGTGGAAGAGAGACAACAGACACGATGATGAAGCCTTACGACACATGCTGGATGAACTCTGCATCCTGATCCGCGCTGGGAAACTGTCGGCTCCAATCTGCACACAAGTACAGCTTCAAGACTTCCGGAAAGCTCTAGAAAACGCCATGAAGCCGTATGTGTCCACCAAACAGGTTTTTGTCAtgtgaatgcaaccccaaacacATGTATAATAAACATGACATCAAAGTCCAGTGAGCGTTATCAGGTTGTCAACAGGGTTTTGGCAATGCCTTTGATTTTGCTGGTATTTATTATATGCTGGGAATTTATGAGCATCATAATGATTATCAGCATGTTAGTCTATATTGAGCACTCACTGATAATCAAACATGCTCAGAGCTTGTGTTGTTGCCGTTTTGCTTTGTCACATGAGCTCAATCAAACATGTAGATCTTCATATCGTGGGTTTGTGTTAAAGATACACACTAGAGTGTGATCTATAAAACACCGGTCATTGACTGAACGATAAAAGAAAGGCAAGATGTCTTTCCTTATATTATTTAGAGCAAAGTTATCAACACATTGTCAATGTTAATGAATATAAAGCATTTGATAAAAA
>TCONS_00019348
GCTTATAGGATGCTCACAGACTTTGAGGAGCTCAAAGCAGgaGACACAGTGATCCAGAATGCCGCTAACAGTGGTGTTGGACAGGCTGTTATTCAGATCGCTGCTGCTAAAGGCATTCACACCATTAATGTCATCAGAGACAGGCCGGATCTGCGGCAGCTCTCAGACAGACTGACAGCGATGGGCGCCACACACGTCATTACAGAAGAGACTCTGAGACGGCCAGAGATGAAGGAGCTCTTTAAGAAGTGGAGGGAGTTTGGTGACCTACGGTGGGATGGCCAAACAACCAGTCACTGTTCCAGTGAGTGCGCTGATCTTTAAAGACGTGAGAGTAAGAGGTTTTTGGGTGACCCAGTGGAAGAGAGACAACAGACACGATGATGAAGCCTTACGACACATGCTGGATGAACTCTGCATCCTGATCCGCGCTGGGAAACTGTCGGCTCCAATCTGCACACAAGTACAGCTTCAAGACTTCCGGAAAGCTCTAGAAAACGCCATGAAGCCGTATGTGTCCACCAAACAGGTTTTTGTCAtgtgaatgcaaccccaaacacATGTATAATAAACATGACATCAAAGTCCA
>TCONS_00019349
ATCCATCATAGATTATCCTTAACTTATCATTGAAGTGTCAGATTAATGTAATCATGTTCATGTAGCTTGTGTTGTACATTGCAGTTATATATGGTGCTTTCTTTAGAGTGCGCTGATCTTTAAAGACGTGAGAGTAAGAGGTTTTTGGGTGACCCAGTGGAAGAGAGACAACAGACACGATGATGAAGCCTTACGACACATGCTGGATGAACTCTGCATCCTGATCCGCGCTGGGAAACTGTCGGCTCCAATCTGCACACAAGTACAGCTTCAAGACTTCCGGAAAGCTCTAGAAAACGCCATGAAGCCGTATGTGTCCACCAAACAGGTTTTTGTCAtgtgaatgcaaccccaaacacATGTATAATAAACATGACATCAAAGTCCAGTGAGCGTTATCAGGTTGTCAACAGGGTTTTGGCAATGCCTTTGATTTTGCTGGTATTTATTATATGCTGGGAATTTATGAGCATCATAATGATTATCAGCATGTTAGTCTATATTGAGCACTCACTGATAATCAAACATGCTCAGAGCTTGTGTTGTTGCCGTTTTGCTTTGTCACATGAGCTCAATCAAACATGTAGATCTTCATATCGTGGGTTTGTGTTAAAGATACACACTAGAGTGTGATCTATAAAACACCGGTCATTGACTGAACGATAAAAGAAAGGCAAGATGTCTTTCCTTATATTATTTAGAGCAAAGTTATCAACACATTGTCAATGTTAATGAATATAAAGCATTTGATAAAAA

Function

symbol description
mecr Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human MECR (mitochondrial trans-2-enoyl-CoA reductase).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity molecular_function

KEGG:

id description
ko00061 Fatty acid biosynthesis
ko00062 Fatty acid elongation

ZFIN:

id description
ZDB-GENE-050417-399 Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human MECR (mitochondrial trans-2-enoyl-CoA reductase).

Ensembl:

ensembl_id ENSDARG00000032326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019347 False 1685 mRNA 0.46 10 4695075 4707668
TCONS_00019348 False 589 nonsense_mediated_decay 0.49 6 4697813 4707300
TCONS_00019349 True 756 lncRNA 0.39 2 4706841 4707668

Neighbor

gene id symbol gene type direction distance location
XLOC_009648 LIN28A coding upstream 8830 4654333 ~ 4686245 (+)
XLOC_009647 NA coding upstream 135163 4559111 ~ 4559912 (+)
XLOC_009646 tfpt coding upstream 154161 4531730 ~ 4540914 (+)
XLOC_009645 ttc29 coding upstream 182280 4497302 ~ 4512795 (+)
XLOC_009644 NA coding upstream 267781 4422621 ~ 4427294 (+)
XLOC_009650 NA coding downstream 1067 4708735 ~ 4711728 (+)
XLOC_009651 themis2 coding downstream 18161 4725829 ~ 4746492 (+)
XLOC_009652 ube3d coding downstream 62598 4770266 ~ 4796565 (+)
XLOC_009653 ibtk coding downstream 131140 4838808 ~ 4895521 (+)
XLOC_009654 FO722028.1 coding downstream 166696 4874364 ~ 4874481 (+)
XLOC_009643 NA non-coding upstream 359211 4330959 ~ 4335864 (+)
XLOC_009642 NA non-coding upstream 378468 4316169 ~ 4316607 (+)
XLOC_009640 NA non-coding upstream 520051 4132537 ~ 4175024 (+)
XLOC_009659 NA non-coding downstream 791606 5499274 ~ 5502699 (+)
XLOC_009668 NA non-coding downstream 1687635 6395303 ~ 6421449 (+)
XLOC_009675 NA non-coding downstream 2410479 7118147 ~ 7118568 (+)

Expression


Co-expression Network