XLOC_009650


Basic Information

Item Value
gene id XLOC_009650
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4708735 ~ 4711728 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021878
gtaatattgaaaaaaattactattgcggtatgacggtatttacaatattgttacatccctacttaataacagttgtcataaacATGCATAAAATTTCATACATATTCATGACGTgttatgtcatgattataaaggtgttaTGGCAGTCTTATGAGCAACCCCTTCAAGAAAAAGTGTTACCTAATACTCTTTAAAATCTGATCCTGTCTATATGAAATGCATAATAATATATGAACTGAcagacctgttgctatgacaGCAACTTATGATTGTATCAAATCATGATTCACCAATAAAGAGTGAACCCCAGGTGCCAAAACAGGCCCAAATTGATTAAATATATGTGAATATTAAATGCTAAGTTAATCAActactatttaaaaacaaaaacaaagtagtCAGTAGGATCAATTGAGACTCCACAGACTGAGCATTAGAGAAAGAAACAAAATGAACAGCACCGGAGCATTGGACGATCCTCCCTCCTTCAACACACACTTCTCATAGGCGTCATAGTCCACTTCCCTCAGCGCACACACATGATCCACACGGCAGTCTGCGTGACACTCCGACAGGTCGTAGCTGACCGAGTTCAGCTCAAAGTACTTCTGTAGGGAACACTTTTCACTGGAAATCCGCTCCATCACACGGTGCATGGAGGCTGGAGAGGCGTCTGGCACGCGAAAGGCCTCCGTCAGGCGGTACTCCTTCTCCCAGCGCGCACGTGCAATGTTTGCATATGTCAGGTTCAGGTAGTAGGTGATGATGTCCTGtgggatttgttttg
>TCONS_00021879
ATAAAATCATATTGATATTTATGACGTGTTATGTTGTGATTATAAAGGTGTTGTGGCAGTCTTATGGCTTCTTCCCAAGGCTTTTGCCTTTGATTGATGAAAACACACAACTATAATGTcctcatgacagtcatgtttataaTAGATTTACGATAAGTCTTGATTATAGTCAAGTTGACAGGTTATGATgcgtttatgtcaagttgtcatagaGACATCTCAACCAATGTCATctctgcatttaaaatgacataactgagctgATGACAATTAATGATAGTTGTCATAAACATgtctaaaatctcattcatattcatcatgtgttatgtcatgattataaaggtgtcatggcagtcttatgaacacccccttcaagAATAATCTATTTCTTTGTCTTTTATTGGCTTTTGCATTTGACCGATGAAAGcagacacaattataatggcctcatgacagtcatgtttatgacagatttatgataaGTCTTTATAGTGTCAAGTTGTCAAAGACAGTTTGTGAtgtgtttatgtcaagttgtaaTAAGCAAATCTCAACCAATGTCATCTCtgcatttaaaatggcaaaaCTGAGCTAATGACaattaataacagttgtcataaacATGCATAAAATTTCATACATATTCATGACGTgttatgtcatgattataaaggtgttaTGGCAGTCTTATGAGCAACCCCTTCAAGAAAAAGTGTTACCTAATACTCTTTAAAATCTGATCCTGTCTATATGAAATGCATAATAATATATGAACTGAcagacctgttgctatgacaGCAACTTATGATTGTATCAAATCATGATTCACCAATAAAGAGTGAACCCCAGGTGCCAAAACAGGCCCAAATTGATTAAATATATGTGAATATTAAATGCTAAGTTAATCAActactatttaaaaacaaaaacaaagtagtCAGTAGGATCAATTGAGACTCCACAGACTGAGCATTAGAGAAAGAAACAAAATGAACAGCACCGGAGCATTGGACGATCCTCCCTCCTTCAACACACACTTCTCATAGGCGTCATAGTCCACTTCCCTCAGCGCACACACATGATCCACACGGCAGTCTGCGTGACACTCCGACAGGTCGTAGCTGACCGAGTTCAGCTCAAAGTACTTCTGTAGGGAACACTTTTCACTGGAAATCCGCTCCATCACACGGTGCATGGAGGCTGGAGAGGCGTCTGGCACGCGAAAGGCCTCCGTCAGGCGGTACTCCTTCTCCCAGCGCGCACGTGCAATGTTTGCATATGTCAGGTTCAGGTAGTAGGTGATGATGTCCTGtgggatttgttttg

Function

GO:

id name namespace
GO:0090278 negative regulation of peptide hormone secretion biological_process
GO:0090075 relaxation of muscle biological_process
GO:0045202 synapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021878 False 787 lncRNA 0.41 2 4708735 4711728
TCONS_00021879 True 1326 lncRNA 0.38 2 4708822 4711728

Neighbor

gene id symbol gene type direction distance location
XLOC_009649 mecr coding upstream 1067 4695075 ~ 4707668 (+)
XLOC_009648 LIN28A coding upstream 22490 4654333 ~ 4686245 (+)
XLOC_009647 NA coding upstream 148823 4559111 ~ 4559912 (+)
XLOC_009646 tfpt coding upstream 167821 4531730 ~ 4540914 (+)
XLOC_009645 ttc29 coding upstream 195940 4497302 ~ 4512795 (+)
XLOC_009651 themis2 coding downstream 14101 4725829 ~ 4746492 (+)
XLOC_009652 ube3d coding downstream 58538 4770266 ~ 4796565 (+)
XLOC_009653 ibtk coding downstream 127080 4838808 ~ 4895521 (+)
XLOC_009654 FO722028.1 coding downstream 162636 4874364 ~ 4874481 (+)
XLOC_009655 TENT5A coding downstream 195962 4907690 ~ 4913970 (+)
XLOC_009644 NA non-coding upstream 281441 4422621 ~ 4427294 (+)
XLOC_009643 NA non-coding upstream 372871 4330959 ~ 4335864 (+)
XLOC_009642 NA non-coding upstream 392128 4316169 ~ 4316607 (+)
XLOC_009640 NA non-coding upstream 533711 4132537 ~ 4175024 (+)
XLOC_009659 NA non-coding downstream 787546 5499274 ~ 5502699 (+)
XLOC_009668 NA non-coding downstream 1683575 6395303 ~ 6421449 (+)
XLOC_009675 NA non-coding downstream 2406419 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 2514948 7226676 ~ 7232180 (+)

Expression


Co-expression Network