XLOC_009651 (themis2)


Basic Information

Item Value
gene id XLOC_009651
gene name themis2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4725829 ~ 4746492 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019350
ATGGGAGACCTCCAGTCCCTGCAAGCCTTCATCAACTGTCTGGATCAGCGCTCTCTGCCCCGCATCCTTCAGGTCTGCTCGGGGGTTTATTTTCAAGGGTCTGTGTATGAGATTTCGGGGAGTGAAGTGTGTTTATCCACTGGAGATTTGGTGAAGATCATTGGTTTGGAGCTCCTGTCTGTGTCTTGTGAAGATGTCAACACGGGAGATTCATTTGTATTGCCTATTCACTACACAGGTAATTTCAGACTCGTCGCTGAAGACCTACCTTATAACACAGTGGAAGAGTTGGTGGGTTTGTGTCCAGTCGGAGTGGACGCCTGCGGCTCCTTCACCTTCAGAAGCACACAAGAGCTGATAGTGGACAACTTCACGCTGGCCCCAGACGAACATTTGTCCCTGCTTTCGGTGGAGGTCTCTGAGGATGGAGAAAGGCTGGCTCGGTGTCAGGTGTTAGGGCATAACATGGCCTACGCCGAGCTTCTGCTTCCTCTGTCTCTGAAAGGAGAGTTTTACGAGTGTGAGGATGAGCGCGGATACTTTCTGCAGGAGATCATGTCCTCGGCCAGACTCAGCTGCCGCCGCTTCTGCAACACAAACACCAAGAGCAGTGGCGGATTGCTGATGTTCAGCCCGGTCTATGAAATCAGCGCCATTATGCATCtaaGGAAGAACATAGTCAAGTTTCCCTCCACCCTAGAAGTAGATGTCCAGGACGTGACGGACCAATTCCAGGATTTAGTCTTCATAACTCCACTATCACTGCCTGAAGTCGTGAGCCAGCCCAAAGAGTCTTTCCCGACAATGGCAGAAATCCTGGAAGCTCCAGAAGGTAACCAGTACTTCAGCTGCAGCTGGTTTGGTGGACTACAAAAAGGCAAGAGCCTCATACTCCACGAATGTCACCAAAAAACAATGATATTAGCCTCGACTCCAAAGGGGAAGAAGGGAAAACAGTACTTCATGATCTCCGACGACTATGGAGGTCGCATGAGGAGACGCGCTCGGGAGTTCGGCTCAGTCTACGAGTTATATTTGGCGTCTTCTCAATCTCCAGGACTCAAAGTAAGCGTGAGCCGGGACTATGAAGCCGATGAGGACGAGGGAATGCCTGCGCTCGGTGTCGGAGAAAATCTAGAGGTTTTGGGGATGAGTTTGATGGATAGACTCAAACCTGGAGCTGCTGAGAAAGTAGAAAGTCTAATTTGTAAACGGACTCATGAGGtggacgatgatgatgatgatgatgaagatgatagtGAGGAAATCTCAATGCCGCTGTTTATGGCGGGACACTTTGTGGAGAAGCTTTCGGATAATAAGAAGTATCGATTAAACGATTTAGTGAGCGGCTCTTTACCGGTTGATGTCAAAGTTGTGACTCGGGATAAAGATCTGGAGAAGGATCCGCTGATGGGGTTACCAGCGTTAAAGCTGGAGGAGACATTCACTGAGACCACCGTGTTGACGAGTCTACCCCATAATCCAGATTGGTGCTTTGAGTTGCCGGTTCGTTGGTTGCAAATGTCAGTCTGTTTCACGTCTGATGATCTGCCGTGGTCTCGGCCTCCAGAGCTTCACGTTGAAACGGTCACCGAGATGACGGAGAAATTCTATTACGAATATCACAAACTCATTGGCAAAACTGAGGAGCCGCCTCCACGTCCACCAAAAAGGAAGAAGTCCAGTTGTGACGCAAACAAAAAGGTTCAATCTTTACCGAGCTTGGGGAGTTCAGTGAGCAAACAACTGGACAAACTTTCGTTGGGTCCGAAAGTAGAAAAACGCTCCGTTCCTCCACCTCCGCAAGACGAGGTGAGCATCAGATTTTATTCATCTccttcactcaaaaaaatgattgctgcttgttcaaactacttacttaaagtGAGCTTAGTGAGTTTTtttggagacaacttaattgttgtaTGTTAAATCCGCTTAAATATGTGAAAACCATTAAGTTAATTTAggtcctgtttacactaatacgttttagttttaaaacgcataggttttCCTGCGGTTATgctatccgtccacactacgccggagtttcgAGTGCTGAAAattgagctttttgaaaacgctgaagaggccgttttaaaacgctgctgcaccgtctcagtgtggatgggggaaaacggagacatctgaaaatgaaggccgggctttttcctcaatattacagtttttctcagtcgctttggtgcatttttcactacactatttacatttgcacaacagtttatgcatttctcaaaacaattagtgcaaactgcaaaacctagctgataacctgcaaaagcgcgtcacatgctcaaaatggatagttcattcctcaaaagcaagtattcatgtcaatcaaactgtcagtatcatcaaaatgaaaagtcctgacaccattgtttatgaacaagatag
>TCONS_00019351
ATGGGAGACCTCCAGTCCCTGCAAGCCTTCATCAACTGTCTGGATCAGCGCTCTCTGCCCCGCATCCTTCAGGTCTGCTCGGGGGTTTATTTTCAAGGGTCTGTGTATGAGATTTCGGGGAGTGAAGTGTGTTTATCCACTGGAGATTTGGTGAAGATCATTGGTTTGGAGCTCCTGTCTGTGTCTTGTGAAGATGTCAACACGGGAGATTCATTTGTATTGCCTATTCACTACACAGGTAATTTCAGACTCGTCGCTGAAGACCTACCTTATAACACAGTGGAAGAGTTGGTGGGTTTGTGTCCAGTCGGAGTGGACGCCTGCGGCTCCTTCACCTTCAGAAGCACACAAGAGCTGATAGTGGACAACTTCACGCTGGCCCCAGACGAACATTTGTCCCTGCTTTCGGTGGAGGTCTCTGAGGATGGAGAAAGGCTGGCTCGGTGTCAGGTGTTAGGGCATAACATGGCCTACGCCGAGCTTCTGCTTCCTCTGTCTCTGAAAGGAGAGTTTTACGAGTGTGAGGATGAGCGCGGATACTTTCTGCAGGAGATCATGTCCTCGGCCAGACTCAGCTGCCGCCGCTTCTGCAACACAAACACCAAGAGCAGTGGCGGATTGCTGATGTTCAGCCCGGTCTATGAAATCAGCGCCATTATGCATCtaaGGAAGAACATAGTCAAGTTTCCCTCCACCCTAGAAGTAGATGTCCAGGACGTGACGGACCAATTCCAGGATTTAGTCTTCATAACTCCACTATCACTGCCTGAAGTCGTGAGCCAGCCCAAAGAGTCTTTCCCGACAATGGCAGAAATCCTGGAAGCTCCAGAAGGTAACCAGTACTTCAGCTGCAGCTGGTTTGGTGGACTACAAAAAGGCAAGAGCCTCATACTCCACGAATGTCACCAAAAAACAATGATATTAGCCTCGACTCCAAAGGGGAAGAAGGGAAAACAGTACTTCATGATCTCCGACGACTATGGAGGTCGCATGAGGAGACGCGCTCGGGAGTTCGGCTCAGTCTACGAGTTATATTTGGCGTCTTCTCAATCTCCAGGACTCAAAGTAAGCGTGAGCCGGGACTATGAAGCCGATGAGGACGAGGGAATGCCTGCGCTCGGTGTCGGAGAAAATCTAGAGGTTTTGGGGATGAGTTTGATGGATAGACTCAAACCTGGAGCTGCTGAGAAAGTAGAAAGTCTAATTTGTAAACGGACTCATGAGGtggacgatgatgatgatgatgatgaagatgatagtGAGGAAATCTCAATGCCGCTGTTTATGGCGGGACACTTTGTGGAGAAGCTTTCGGATAATAAGAAGTATCGATTAAACGATTTAGTGAGCGGCTCTTTACCGGTTGATGTCAAAGTTGTGACTCGGGATAAAGATCTGGAGAAGGATCCGCTGATGGGGTTACCAGCGTTAAAGCTGGAGGAGACATTCACTGAGACCACCGTGTTGACGAGTCTACCCCATAATCCAGATTGGTGCTTTGAGTTGCCGGTTCGTTGGTTGCAAATGTCAGTCTGTTTCACGTCTGATGATCTGCCGTGGTCTCGGCCTCCAGAGCTTCACGTTGAAACGGTCACCGAGATGACGGAGAAATTCTATTACGAATATCACAAACTCATTGGCAAAACTGAGGAGCCGCCTCCACGTCCACCAAAAAGGAAGAAGTCCAGTTGTGACGCAAACAAAAAGGTTCAATCTTTACCGAGCTTGGGGAGTTCAGTGAGCAAACAACTGGACAAACTTTCGTTGGGTCCGAAAGTAGAAAAACGCTCCGTTCCTCCACCTCCGCAAGACGAGCAGACCCTACATCAGCCTCCTCCGCTGTTGCCTAGAAAGAGCATATCGCTAGCAGAAAGTTCCAGTATGCCCAACATGTATGTGAAAAGCCCTAGAATGTCTCACAAATCAGGTACGTTTACGGATTACATTCAGATACTAGTGGTTCTAAATAAGATGTATACTTTAACCTTTTCTTATCTTCCTCTAATAAAACAGCGAAGAGACTTTCTGACTCGGATCATGACTACGAGTCTATCGAGGACGCATTTATAA
>TCONS_00019352
TGCAAGCCTTCATCAACTGTCTGGATCAGCGCTCTCTGCCCCGCATCCTTCAGGTCTGCTCGGGGGTTTATTTTCAAGGGTCTGTGTATGAGATTTCGGGGAGTGAAGTGTGTTTATCCACTGGAGATTTGGTGAAGATCATTGGTTTGGAGCTCCTGTCTGTGTCTTGTGAAGATGTCAACACGGGAGATTCATTTGTATTGCCTATTCACTACACAGGTAATTTCAGACTCGTCG

Function

symbol description
themis2 Predicted to be involved in T cell receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Orthologous to human THEMIS2 (thymocyte selection associated family member 2).

GO:

id name namespace
GO:0050852 T cell receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-89 Predicted to be involved in T cell receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Orthologous to human THEMIS2 (thymocyte selection associated family member 2).

Ensembl:

ensembl_id ENSDARG00000058964

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019350 False 2424 mRNA 0.46 4 4725829 4739346
TCONS_00019351 False 2070 mRNA 0.48 5 4725829 4746492
TCONS_00019352 True 237 mRNA 0.47 3 4725848 4735283

Neighbor

gene id symbol gene type direction distance location
XLOC_009650 NA coding upstream 14101 4708735 ~ 4711728 (+)
XLOC_009649 mecr coding upstream 18161 4695075 ~ 4707668 (+)
XLOC_009648 LIN28A coding upstream 39584 4654333 ~ 4686245 (+)
XLOC_009647 NA coding upstream 165917 4559111 ~ 4559912 (+)
XLOC_009646 tfpt coding upstream 184915 4531730 ~ 4540914 (+)
XLOC_009652 ube3d coding downstream 23774 4770266 ~ 4796565 (+)
XLOC_009653 ibtk coding downstream 92316 4838808 ~ 4895521 (+)
XLOC_009654 FO722028.1 coding downstream 127872 4874364 ~ 4874481 (+)
XLOC_009655 TENT5A coding downstream 161198 4907690 ~ 4913970 (+)
XLOC_009656 elovl4a coding downstream 409928 5156420 ~ 5167280 (+)
XLOC_009644 NA non-coding upstream 298535 4422621 ~ 4427294 (+)
XLOC_009643 NA non-coding upstream 389965 4330959 ~ 4335864 (+)
XLOC_009642 NA non-coding upstream 409222 4316169 ~ 4316607 (+)
XLOC_009659 NA non-coding downstream 752782 5499274 ~ 5502699 (+)
XLOC_009668 NA non-coding downstream 1648811 6395303 ~ 6421449 (+)
XLOC_009675 NA non-coding downstream 2371655 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 2480184 7226676 ~ 7232180 (+)

Expression


Co-expression Network