XLOC_009652 (ube3d)


Basic Information

Item Value
gene id XLOC_009652
gene name ube3d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4770266 ~ 4796565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019353
agtaacgTTAACACTGAACAGATGCAAACTGAATTCTGAAGACTCTTAATATGAAATGACGGTGTCGCAGACATTTTGTCGTCACGTTGTTTTGTGTGTCGCGTGGGATTTAAGAGTAGAATCGATGAATCCATAGCTTCTGTAAAGAAATACCAATGGAAGAGACTGCGAACACAGATGTCCTCTTTATTGAGCTCAGACAGAAGCTGCAAAGCGGCCTTTTGTTCATTCGCAGTGACGTCATCGGTGGTGGTGCAGATGTGAAGATCGAATCCAAACCAGACTCCATCCTGAACGTCCAGACTCCTGACAGCAGCTTTCAGGTGACCCTCACACCTGGAGTCAGTCTGGTGGAGACGCAGAAGCAGAAAAGCCCAGCAAACTCTGAACAAGGCTCCCATTACAGACTACGTCTAAAAGTGGAGCAGCCAACAGAATCTCCTTGCAGTGTGATTGGCCAGCTGAGAGTCGATGAGAGTTACTCCGTACTGTGCCAATCCTGTGGCTCCAGAGTGCTCCAACACAGgtCTTTTGGACGAGTTCTTCCTTTGCCCAATGGAAACTGGAATGCATTAGTGGACGACTGGTGCTGCCATCCAGATCCCTTCGCCAACAGAAAACTGCTGCCGCGAGCTGGAGACTGCCTGCTGGGGGACACCTTCATTCTGCTGCTGCGGGACGACGGCTGCGATGAGAGTCTGACACGGGCCGCTGCAGAGAAGCGTGTGCTGGTGTCCTGCAGGAGGTGCTCCACTGCGCTGGGAGAGGAGATCACTGCGgAGGTGCTGAAGCTCTACATTACTGAAATATCAGTGAAGCCCAGTGAGGATGGAGAGTGTGATCTAACACAGCTCAGTTTAGAGCCCAAGTCAGAGTCAGTACgGCAGAGATTTTTGGAGCAAACTCTTGCATCGAGACTGGTGGAGCTTTCAGCAGCACAGAGTATATTTCGCTTTTCCATTCAAAGCCCAGATGGAAAAGCTGAGATTTTGCTGTGGCTTCTGAACACCGACACTCTGGTCGCCTCATTTCCTGCTCCAGCAGCGAGAGCCGACGGCTTCATCTCCGTCGGTGACTCGCATCCCAGAATGCATCAGTCATGTCAGGCCGTGGCAGCAGTCAAAGTGCTCTACATCCTCTGCTCTGACAGCAAGCTCAGAGATGTTGTGGATGTGTGGGAGAAGGACATCAGCGTTCACCCACTTCCCCTCCCGCAGCGCTCATGTGAGGAGCTCAAGACACTTCTGACGTCCAGCACCTTCAGACTGCCTGCATTCCTGCGCTGCATGAACTCCTTTCAGGTGGCCTACATGCGGATGTGATGTGACATGATGTCATCATCTTATTGGGTATGAAACATATGAAACcaacacattaaatacatttttatataaaaagtattttgttCTATAGTCTTTTCGTTTATTTTCACATGGTCTGCAAATATCTGTATggtcaaagaaaaaaaagtggcctttatattaataaaaaaaaaaaacaaattctactgcaa
>TCONS_00019354
GAGTAGAATCGATGAATCCATAGCTTCTGTAAAGAAATACCAATGGAAGAGACTGCGAACACAGATGTCCTCTTTATTGAGCTCAGACAGAAGCTGCAAAGCGGCCTTTTGTTCATTCGCAGTGACGTCATCGGTGGTGGTGCAGATGTGAAGATCGAATCCAAACCAGACTCCATCCTGAACGTCCAGACTCCTGACAGCAGCTTTCAGGTGACCCTCACACCTGGAGTCAGTCTGGTGGAGACGCAGAAGCAGAAAAGCCCAGCAAACTCTGAACAAGGCTCCCATTACAGACTACGTCTAAAAGTGGAGCAGCCAACAGAATCTCCTTGCAGTGTGATTGGCCAGCTGAGAGTCGATGAGAGTTACTCCGTACTGTGCCAATCCTGTGGCTCCAGAGTGCTCCAACACAGgtCTTTTGGACGAGTTCTTCCTTTGCCCAATGGAAACTGGAATGCATTAGTGGACGACTGGTGCTGCCATCCAGATCCCTTCGCCAACAGAAAACTGCTGCCGCGAGCTGGAGACTGCCTGCTGGGGGACACCTTCATTCTGCTGCTGCGGGACGACGGCTGCGATGAGAGTCTGACACGGGCCGCTGCAGAGAAGCGTGTGCTGGTGTCCTGCAGGAGGTGCTCCACTGCGCTGGGAGAGGAGATCACTGCGgGGGCTTTCATCTTCAGGAAGCTACACGAACAACAACTGCTTCTCCTTTAGACAATATAATAAATCTTTGTGTAATGAATTGACA
>TCONS_00019355
CCAACACAGGTCAGCAGTGTTTCTACTGGTTCTACTGATTTCTTTTACATTATTTCAGAGTATTAAAGTATTTCAGAGTATTTCGTTCAACAAAAAATGAAGATTCGGTCATCATTTCCTCATGGGGGATGGATGGTATATAAGGGATTTTTGGTTGTCGCttaagttgaagtcaaaattatttgtcaaAATCTGAGGACATTTCAAGTGGATGTACGTCACGATAGCAgaaaaaaggacaatcttaactACTGTTTATTGGCGACTTGGAGACTCTGAATCCAACACATACGGCCTATAACTCTGGAgtCTTTTGGACGAGTTCTTCCTTTGCCCAATGGAAACTGGAATGCATTAGTGGACGACTGGTGCTGCCATCCAGATCCCTTCGCCAACAGAAAACTGCTGCCGCGAGCTGGAGACTGCCTGCTGGGGGACACCTTCATTCTGCTGCTGCGGGACGACGGCTGCGATGAGAGTCTGACACGGGCCGCTGCAG

Function

symbol description
ube3d Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D).

GO:

id name namespace
GO:0051865 protein autoubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0030332 cyclin binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-091218-3 Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D).

Ensembl:

ensembl_id ENSDARG00000026178

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019353 False 1513 mRNA 0.49 10 4770266 4796565
TCONS_00019354 False 751 processed_transcript 0.52 6 4770379 4779952
TCONS_00019355 True 499 processed_transcript 0.45 3 4774133 4776956

Neighbor

gene id symbol gene type direction distance location
XLOC_009651 themis2 coding upstream 23774 4725829 ~ 4746492 (+)
XLOC_009650 NA coding upstream 58538 4708735 ~ 4711728 (+)
XLOC_009649 mecr coding upstream 62598 4695075 ~ 4707668 (+)
XLOC_009648 LIN28A coding upstream 84021 4654333 ~ 4686245 (+)
XLOC_009647 NA coding upstream 210354 4559111 ~ 4559912 (+)
XLOC_009653 ibtk coding downstream 42243 4838808 ~ 4895521 (+)
XLOC_009654 FO722028.1 coding downstream 77799 4874364 ~ 4874481 (+)
XLOC_009655 TENT5A coding downstream 111125 4907690 ~ 4913970 (+)
XLOC_009656 elovl4a coding downstream 359855 5156420 ~ 5167280 (+)
XLOC_009657 soga3a coding downstream 387837 5184402 ~ 5231397 (+)
XLOC_009644 NA non-coding upstream 342972 4422621 ~ 4427294 (+)
XLOC_009643 NA non-coding upstream 434402 4330959 ~ 4335864 (+)
XLOC_009642 NA non-coding upstream 453659 4316169 ~ 4316607 (+)
XLOC_009659 NA non-coding downstream 702709 5499274 ~ 5502699 (+)
XLOC_009668 NA non-coding downstream 1598738 6395303 ~ 6421449 (+)
XLOC_009675 NA non-coding downstream 2321582 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 2430111 7226676 ~ 7232180 (+)

Expression


Co-expression Network