XLOC_009655 (TENT5A)


Basic Information

Item Value
gene id XLOC_009655
gene name TENT5A
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4907690 ~ 4913970 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019359
ATGGCGGATGAGGACGCGGGCGCGGAGAGCAGCAACTTCAGCGTGCTGAGCTGGGAGCAGGTCCAGCGTCTGGATCTCATCCTGACCGAGACCATCCCGATCCACGGCCGCGGGAACTTCCCGACTCTGCAGATGAAGCCGCGGCAGATCGTGACAGCGGTGCGAAGGCGCATGCGGGAGAAGAGCATCCATGTGCGGGACGTGCGGCTCAACGGGTCCGCCGCCAGCCACGTCCTGCACGGCGACAGCGGGCTCGGCTATAAAGACCTGGACCTCATATTCCGCGTAGAGCTGAAGGGAGAAACTGAGTTTCAGATCGTCAAGAACATCGTGCTGGACTGTCTGCTGGACTTTTTACCCGATGGGGTCAATAAAGAGAAAATCACACCGCTCACACTCAAGGAGGCGTATGTTCAGAAGATGGTGAAGGTGTGCAATGATTCGGACCGCTGGAGTCTCATTTCCCTCTCCAATAACCGGGGCAAAAACGTTGAGCTGAAGTTTGTGGACTCGCTACGCCGACAATTCGAATTCAGTGTCGACTCCTTCCAGATTAAACTAGACTCTCTGCTCCTTTTCTACGAGTGCTCCGAGAACCCGATGGCCAAAACATTCCACCCTACCATCATCGGCGAGAGCGTGTACGGAGATTTCGCCGCCGCGTTGGACCACCTGCGCAACAAAATAATCTGCACCAGGAATCCTGAGGAAATCCGAGGCGGAGGCCTGCTGAAATACTGCCATCTGCTGGTCAGGGGTTTCCGCGCCGCCTCCGAGTCTGAAATGAAGTCTCTCCAGCGCTACATGTGCTCCCGCTTCTTCATCGACTTCTCGGACATCAGCGAACAGCAGCGCAAGCTTGAGTCGTACCTCCAGAACCACTTTGTAGGCTTGGAGGATCGCAAGTACGACTATCTGACGACTCTTCATAGTGTGGTGAACGAAAGTACGGTGTGTCTGATGGGACACGAGCGGCGGCAGACGCTAGGACTCATCGCCATGCTAGCAGTGCGTGTGCTAGCCGAACAGAACGTCATTCCCAACGTGGCTAACGTCACATGCTATTATCAGCCGGCTCCGTACGTAGCTGATGGCAATTTTAGCAATTATTACATCGCTCAAGTTCAGCCGGTGTTCACATGCCATCAGCAGAGCTACTCCACGTGGCTACCGTGCAACTGA

Function

symbol description
tent5a Enables RNA binding activity. Predicted to be involved in mRNA stabilization. Predicted to act upstream of or within response to bacterium. Implicated in lung non-small cell carcinoma; osteoarthritis; and osteogenesis imperfecta type 18.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116442

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019359 True 1182 mRNA 0.55 2 4907690 4913970

Neighbor

gene id symbol gene type direction distance location
XLOC_009653 ibtk coding upstream 12169 4838808 ~ 4895521 (+)
XLOC_009654 FO722028.1 coding upstream 33209 4874364 ~ 4874481 (+)
XLOC_009652 ube3d coding upstream 111125 4770266 ~ 4796565 (+)
XLOC_009651 themis2 coding upstream 161198 4725829 ~ 4746492 (+)
XLOC_009650 NA coding upstream 195962 4708735 ~ 4711728 (+)
XLOC_009656 elovl4a coding downstream 242450 5156420 ~ 5167280 (+)
XLOC_009657 soga3a coding downstream 270432 5184402 ~ 5231397 (+)
XLOC_009658 plecb coding downstream 337798 5251768 ~ 5497474 (+)
XLOC_009659 NA coding downstream 585304 5499274 ~ 5502699 (+)
XLOC_009660 CR848788.2 coding downstream 625219 5539189 ~ 5544738 (+)
XLOC_009647 NA non-coding upstream 347778 4559111 ~ 4559912 (+)
XLOC_009644 NA non-coding upstream 480396 4422621 ~ 4427294 (+)
XLOC_009643 NA non-coding upstream 571826 4330959 ~ 4335864 (+)
XLOC_009668 NA non-coding downstream 1481333 6395303 ~ 6421449 (+)
XLOC_009675 NA non-coding downstream 2204177 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 2312706 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 non-coding downstream 2313614 7227584 ~ 7294953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_04247989_04251347 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding CI01000065 null 4245663 ~ 4251797 (+)
bowfin (Amia calva) AMCG00010841 fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733 coding CM030133.1 CM030133.1 2442227 ~ 2449554 (-)