XLOC_009659


Basic Information

Item Value
gene id XLOC_009659
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5499274 ~ 5502699 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021681
GTCAATGATGGGTCTATGGAGTCCTCTGCTGGCAGAGAGTTGAATGACGTTGTGTTGAATCTGTAGGTTGAAAGGCAGAACCCAGATGGAGACACCTTTATGGATAGACTTTTGTTTAGCCAAGACGCCCACGAAAGCCTCTCTGACCTGCCTGCTTTAACTGAGCCCGTGCCGTGTCTTTCTCCACATCATACCAGCTCTACGGATGCAGCTGCACAGAAAGGAAAACAACATGGcaTGTGCTCGGAGCAGTGGAGTCAGTGGCAGACGGAGTTCAGAGGGCAGATTAGAGCTCTCAGACACTGGCTGAAGACCATGGAGAACAGACTGCCTGACCTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021681 True 340 lncRNA 0.51 3 5499274 5502699

Neighbor

gene id symbol gene type direction distance location
XLOC_009658 plecb coding upstream 1800 5251768 ~ 5497474 (+)
XLOC_009657 soga3a coding upstream 267877 5184402 ~ 5231397 (+)
XLOC_009656 elovl4a coding upstream 331994 5156420 ~ 5167280 (+)
XLOC_009655 TENT5A coding upstream 585304 4907690 ~ 4913970 (+)
XLOC_009653 ibtk coding upstream 603753 4838808 ~ 4895521 (+)
XLOC_009660 CR848788.2 coding downstream 36490 5539189 ~ 5544738 (+)
XLOC_009661 macf1b coding downstream 77045 5579744 ~ 5582764 (+)
XLOC_009662 zgc:91890 coding downstream 94901 5597600 ~ 5605341 (+)
XLOC_009663 NA coding downstream 109848 5612547 ~ 5636376 (+)
XLOC_009664 zgc:158689 coding downstream 175372 5678071 ~ 5710821 (+)
XLOC_009654 FO722028.1 non-coding upstream 624793 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 787546 4708735 ~ 4711728 (+)
XLOC_009647 NA non-coding upstream 939362 4559111 ~ 4559912 (+)
XLOC_009644 NA non-coding upstream 1071980 4422621 ~ 4427294 (+)
XLOC_009643 NA non-coding upstream 1163410 4330959 ~ 4335864 (+)
XLOC_009668 NA non-coding downstream 892604 6395303 ~ 6421449 (+)
XLOC_009675 NA non-coding downstream 1615448 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 1723977 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 non-coding downstream 1724885 7227584 ~ 7294953 (+)
XLOC_009681 NA non-coding downstream 2012151 7514850 ~ 7515507 (+)

Expression


Co-expression Network