XLOC_009663


Basic Information

Item Value
gene id XLOC_009663
gene name NA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5612547 ~ 5636376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019376
GCTCTCAACTCCTCCTTTGTCTGAGTCCTTTCGGTCCTCCgccttgatatttatttatttccttttcgtTAGTggggtatatttatatatatccttATCTCTCGGTTATTGAATGACATTCGATTCCGAGACATATATGCCTAAAAGCAAAGCCCCCAAGATGGATGATCTGGACTACATCCCAGCGGACCTAAGCCCAGAGGAGCGCTCCGAGCTGGAGGAGATCCGGCGCAGGAAAGGTGCTCTGCTGCTGGAGATCCAGAGGCTGAAGGAGGAGCTGAGAGAAGCTATCATTGAGGTTGAGGGACTGGAGACCAGCACTGAGGGCAGTAAAACATTACAAAAGAGTCGACATGTGGCCATGGGCAGGAAAAAATTCAACATGGATCCGAAAAAGGGCATTGTGTTCCTAGTGGAGAACGAGCTTCTCAGACACACTCCAGAGGACATTGCTCAGTTTCTGTACAAAGGAGAAGGACTTAATAAAACTGCAATAGGAGACTATCTGGGTGAAAGAGATGACTTCAATATTAAGGTATTGCAGGCATTTGTGGATCTTCACGAGTTCACAGATCTGAACTTGGTACAAGCACTTCGGCAGTTTCTGTGGAGTTTCCGCTTGCCAGGCGAAGCTCAAAAAATCGACAGGATGATGGAGGCCTTCGCACAGAGATACTGTCACTGCAATCCTGGAGTCTTCCAGAgcacagACACCTGTTACGTGCTGTCATTTGCCATCATCATGCTGAACACCAGTCTGCACAACCCCAACGTGCGGGACAAGCCCACGGTGGAACGCTTCATCAGCATGAACAGAGGCATCAATGATGGCGGAGATTTACCAGAGGAGCTGCTCAGAAATCTGTATGATAGCATTAAGAACGAGCCCTTTAAGATCCCGGAGGATGATGGGAATGACCTGACGCACACATTCTTCAACCCGGACAGAGAAGGCTGGCTCCTCAAGCTGGGAGGTCGAGTAAAAACATGGAAGAGACGATGGTTCATTCTGACAGACAACTGCCTCTATTACTTTGAGTACACAACGgatAAGGAGCCCAGAGGCATCATTCCACTGGAGAATCTGAGCATTCGTGAGGTTGAAGACCCGAGAAAGCCAAACTGCTTTGAGCTCTACATCCCGAATAACCGCGGTCAGCTGATTAAAGCCTGTAAGACGGAGGCTGATGGTCGAGTGGTGGAGGGAAACCACATGGTGTACCGGATCTCTGCTCCCACCCCAGAGGAGAAGGACGAGTGGATACACAGCATCAAATCTGCTGTGAGTGTTGATCCTTTCTACGAGATGCTAGCTGCCAGAAAGAAGCGCATTTCCCTAAAGAAAAAGGAAGAGCAACCCTA
>TCONS_00019377
ATGACATTCGATTCCGAGACATATATGCCTAAAAGCAAAGCCCCCAAGATGGATGATCTGGACTACATCCCAGCGGACCTAAGCCCAGAGGAGCGCTCCGAGCTGGAGGAGATCCGGCGCAGGAAAGGTGCTCTGCTGCTGGAGATCCAGAGGCTGAAGGAGGAGCTGAGAGAAGCTATCATTGAGGTTGAGGGACTGGAGACCAGCACTGAGGGCAGTAAAACATTACAAAAGAGTCGACATGTGGCCATGGGCAGGAAAAAATTCAACATGGATCCGAAAAAGGGCATTGTGTTCCTAGTGGAGAACGAGCTTCTCAGACACACTCCAGAGGACATTGCTCAGTTTCTGTACAAAGGAGAAGGACTTAATAAAACTGCAATAGGAGACTATCTGGGTGAAAGAGATGACTTCAATATTAAGGTATTGCAGGCATTTGTGGATCTTCACGAGTTCACAGATCTGAACTTGGTACAAGCACTTCGGCAGTTTCTGTGGAGTTTCCGCTTGCCAGGCGAAGCTCAAAAAATCGACAGGATGATGGAGGCCTTCGCACAGAGATACTGTCACTGCAATCCTGGAGTCTTCCAGAgcacagACACCTGTTACGTGCTGTCATTTGCCATCATCATGCTGAACACCAGTCTGCACAACCCCAACGTGCGGGACAAGCCCACGGTGGAACGCTTCATCAGCATGAACAGAGGCATCAATGATGGCGGAGATTTACCAGAGGAGCTGCTCAGAAATCTGTATGATAGCATTAAGAACGAGCCCTTTAAGATCCCGGAGGATGATGGGAATGACCTGACGCACACATTCTTCAACCCGGACAGAGAAGGCTGGCTCCTCAAGCTGGCAGGAGGTCGAGTAAAAACATGGAAGAGACGATGGTTCATTCTGACAGACAACTGCCTCTATTACTTTGAGTACACAACGgatAAGGAGCCCAGAGGCATCATTCCACTGGAGAATCTGAGCATTCGTGAGGTTGAAGACCCGAGAAAGCCAAACTGCTTTGAGCTCTACATCCCGAATAACCGCGGTCAGCTGATTAAAGCCTGTAAGACGGAGGCTGATGGTCGAGTGGTGGAGGGAAACCACATGGTGTACCGGATCTCTGCTCCCACCCCAGAGGAGAAGGACGAGTGGATACACAGCATCAAATCTGCTGTGAGTGTTGATCCTTTCTACGAGATGCTAGCTGCCAGAAAGAAGCGCATTTCCCTAAAGAAAAAGGAAGAGCAACCCTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000028800

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019376 False 1362 mRNA 0.49 12 5612547 5636375
TCONS_00019377 True 1254 mRNA 0.50 12 5612659 5636376

Neighbor

gene id symbol gene type direction distance location
XLOC_009662 zgc:91890 coding upstream 7206 5597600 ~ 5605341 (+)
XLOC_009661 macf1b coding upstream 29783 5579744 ~ 5582764 (+)
XLOC_009660 CR848788.2 coding upstream 67809 5539189 ~ 5544738 (+)
XLOC_009659 NA coding upstream 109848 5499274 ~ 5502699 (+)
XLOC_009658 plecb coding upstream 115073 5251768 ~ 5497474 (+)
XLOC_009664 zgc:158689 coding downstream 41695 5678071 ~ 5710821 (+)
XLOC_009665 ccka coding downstream 138601 5774977 ~ 5779201 (+)
XLOC_009666 ulk4 coding downstream 262502 5898878 ~ 6182429 (+)
XLOC_009667 cmtm8b coding downstream 700576 6336952 ~ 6347186 (+)
XLOC_009668 NA coding downstream 758927 6395303 ~ 6421449 (+)
XLOC_009654 FO722028.1 non-coding upstream 738066 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 900819 4708735 ~ 4711728 (+)
XLOC_009647 NA non-coding upstream 1052635 4559111 ~ 4559912 (+)
XLOC_009644 NA non-coding upstream 1185253 4422621 ~ 4427294 (+)
XLOC_009675 NA non-coding downstream 1481771 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 1590300 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 non-coding downstream 1591208 7227584 ~ 7294953 (+)
XLOC_009681 NA non-coding downstream 1878474 7514850 ~ 7515507 (+)

Expression


Co-expression Network