XLOC_009664 (zgc:158689)


Basic Information

Item Value
gene id XLOC_009664
gene name zgc:158689
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5678071 ~ 5710821 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019378
TAGACATTGTCCAGAAGAGACAGACAGCGAGCCGCTCGAGCTCCACAGACCCGCAGCAAATGGACATTCCGCGGCCGGAGAGGATGAGAGTTTGACGCGGTCATGGAGGAGCGTGAATGAAGAACAATGAGCAGCGAGTGCTGACCTGGAAACAAAAGTCGGAGAAAGAAAAGTGAAAAACACAGCAGACAAAGCGCCGAGGACACGATGAACATTGACAAGTTGCGTCTGCTGTGATTCCTGAAGTCTGAAAGCAAGGTGAAGCTGGAGAGAAATCACAATGTCACGCTCAGATGAGGTCAACAAGATGACAGAAAATGTCTACAAGGGCATTCTGGACCAGTTCAACCCCAGTCTGAAGAATTTCGTCACTATGGGGAAACACTATGAAAAGGCTCTGACTGGCGTCACAGTGGCAGCTAAAGGATATTTTGATGCGCTGGTTAAACTTGGAGAGCTGGCCAGCGATAGTCAGGGCTCAAAAGAACTGGGCGACACGTTGTTCCAGATGGCGGAGGTTCATCGGCAGATCCAGGTCCAGCTCGAGGACGTGCTGAAGCTGTTTCATTCAGAGCTGCTGTCTCAGCTGGAGCAGAAACTGGAGTTAGACATCAAGTATCTCACTGGCACGCTGAAGAAATACCAGAGTGAGAGGAAGTCAAAGGCGGAGTCGATCGAGCGCTGTCAGTCACAGCTGAAGAAGCTGAGAAGGAAGAGTCAGGCCAGTCGACATCCCAATAAATATGGAGACAGAGAGATGCAGtatGTGGAGCTGATGAGTCGTCGGCAGGCAGAGCTGGACTCTTTGGTGGCGGTGGGCTACAGATCTGCTCTGACAGAAGAAAGACGGCGCTACTGTTTCCTGGTGGACCGTCAGTGTTCGGTCACCAAGATCCTCATCAACTACCACTGCAAGGTGAGAGAGCTGTTGTCTCAGAAGCTATCATCATGGCAGCAGTCGTGTGCTCAGCCCACTAAACTGCCAGAGCGGGCGCTAAACCTGCTGCGCCACACTGCCCCCCAGAGCTCTGGAGGAGCGGGACTGGCGGAAGTGCTGCGAAATGCCAAACTGGGCATCACACAGCCTGCAGAACAGAGGCTGTCGGTGCAGGAGGTTCCTCCTCTGTTGAACGGTGACAGCAGCAGCAGTCGctctcagcagcagcagcagcagcgctcTCAATCTGACAGTCTGTCCCCCAGCAACGCCTCTCAGCAGAACGGACACTCCAGCTCTACAGCAAGCCCTGCCCACTCTCAGCCACACCAGGGTGTGGTCAGCTCTGTAGGCCACACCTCCAGCTCCTCCCACAGCTCTCTGCAGGGCCTGACTCCACCTCTCGCGGCGCCTCACAGTCCTCCTCTGCCCCACAGTGCGCCTTTGTCCCGTGCGCTCACACCCGTTCCATCTGCGGCCCCTCATGCAGCGTCCGGCCTCGGTCTGCTGTATGGCACGTCCACCCTCCCACTGCCCAGGAGACAGAGCAGCGACGCACACACCTCTTTCttagGCTCCACTCTGCCTCGTGTTCTTCCTCTGTGTTCTCCGTGTCGTGTGGAGGCTATGTTCGCTCACTCCTCTGAGTCCTGTGATGGAGATCCGGCTGGCGGAGGAGGCTCCTGTCTGCTGTCCTTCCAACCCGGAGACACACTTGGCCTGCTGATCAGTGAACCCCGAGACGGTTGGCACTACGGGCAGAACGAACGCACCGGACGAAAAGGCTGGTTTCCCTTCTCCTACACGCAGCCGTGCCCGAACACTCCTGGACAAGACATCAGTCCTGCTGTGCTCTCTAAGGTGAACAGCACCAGTATGGGTCAGTTAGACAGGCTTCCTCCTGCCGGTCAGCAGCCGCAGGTCAGTCCAGACTCAGAGGACGAGCGGAGCATCATCTCTCAGCGAATCAGCACCTTCAGGCCCAGACCCTACAGCATGATGAACCCAGACACCGGCAGGACCAGCCCACGCCTGCGCTTCAAGGACAGGATGTCCACTGATTTTTCTCCTCCACCTCCATCCCCTACCAGGATCAACCCATTCGCTCATATTCAGCTCAGGAAGACGGTGACCAACGACCGCTCCGCTCCTCTGATACAGTAAAGATGATCGGATAATTACTGCAAAGATGCCTTGATGATCTGCTGAACCCTCCAGAGGCAGGAGTTACACTTTTGCTGACAGAAACAGAGAATTAGGTGCAGTTAAATGTGTTAAGATCATTTAGCAGATCGAGTGTATATTAGTAATATATAGAGTTAAAGACAAGCTGATAAGCCCCcttgtaaattaaaaaacaaatatattactcAAGTGCAGCTTAACAGAGCAagtatattttttttacactattttcattatttttggagcaaatcttatttcttttagtttccctgaaataaagt
>TCONS_00019379
AGACATTGTCCAGAAGAGACAGACAGCGAGCCGCTCGAGCTCCACAGACCCGCAGCAAATGGACATTCCGCGGCCGGAGAGGATGAGAGTTTGACGCGGTCATGGAGGAGCGTGAATGAAGAACAATGAGCAGCGAGTGCTGACCTGGAAACAAAAGTCGGAGAAAGAAAAGTGAAAAACACAGCAGACAAAGCGCCGAGGACACGATGAACATTGACAAGTTGCGTCTGCTGTGATTCCTGAAGTCTGAAAGCAAGGTGAAGCTGGAGAGAAATCACAATGTCACGCTCAGATGAGGTCAACAAGATGACAGAAAATGTCTACAAGGGCATTCTGGACCAGTTCAACCCCAGTCTGAAGAATTTCGTCACTATGGGGAAACACTATGAAAAGGCTCTGACTGGCGTCACAGTGGCAGCTAAAGGATATTTTGATGCGCTGGTTAAACTTGGAGAGCTGGCCAGCGATAGTCAGGGCTCAAAAGAACTGGGCGACACGTTGTTCCAGATGGCGGAGGTTCATCGGCAGATCCAGGTCCAGCTCGAGGACGTGCTGAAGCTGTTTCATTCAGAGCTGCTGTCTCAGCTGGAGCAGAAACTGGAGTTAGACATCAAGTATCTCACT
>TCONS_00019380
CCGCGGCCGGAGAGGATGAGAGTTTGACGCGGTCATGGAGGAGCGTGAATGAAGAACAATGAGCAGCGAGTGCTGACCTGGAAACAGTGAGTTCGAGTTTGGCTGAGGGTGAGGGGTGGACGAGGGATTTACTGGGTCAAACTAACTAGCTAAACTACCCCCACCACTCTATAGAAAGTCGGAGAAAGAAAAGTGAAAAACACAGCAGACAAAGCGCCGAGGACACGATGAACATTGACAAGTTGCGTCTGCTGTGATTCCTGAAGTCTGAAAGCAAGGTGAAGCTGGAGAGAAATCACAATGTCACGCTCAGATGAGGTCAACAAGATGACAGAAAATGTCTACAAGGGCATTCTGGACCAGTTCAACCCCAGTCTGAAGAATTTCGTCACTATGGGGAAACACTATGAAAAGGCTCTGACTGGCGTCACAGTGGCAGCTAAAGGATATTTTGATGCGCTGGTTAAACTTGGAGAGCTGGCCAGCGATAGTCAGGGCTCAAAAGAACTGGGCGACACGTTGTTCCAGATGGCGGAGGTTCATCGGCAGATCCAGGTCCAGCTCGAGGACGTGCTGAAGCTGTTTCATTCAGAGCTGCTGTCTCAGCTGGAGCAGAAACTGGAGTTAGACATCAAGTATCTCACTGGCACGCTGAAGAAATACCAGAGTGAGAGGAAGTCAAAGGCGGAGTCGATCGAGCGCTGTCAGTCACAGCTGAAGAAGCTGAGAAGGAAGAGTCAGGCCAGTCGACATCCCAATAAATATGGAGACAGAGAGATGCAGtatGTGGAGCTGATGAGTCGTCGGCAGGCAGAGCTGGACTCTTTGGTGGCGGTGGGCTACAGATCTGCTCTGACAGAAGAAAGACGGCGCTACTGTTTCCTGGTGGACCGTCAGTGTTCGGTCACCAAGATCCTCATCAACTACCACTGCAAGGTGAGAGAGCTGTTGTCTCAGAAGCTATCATCATGGCAGCAGTCGTGTGCTCAGCCCACTAAACTGCCAGAGCGGGCGCTAAACCTGCTGCGCCACACTGCCCCCCAGAGCTCTGGAGGAGCGGGACTGGCGGAAGTGCTGCGAAATGCCAAACTGGGCATCACACAGCCTGCAGAACAGAGGCTGTCGGTGCAGGAGGTTCCTCCTCTGTTGAACGGTGACAGCAGCAGCAGTCGctctcagcagcagcagcagcagcgctcTCAATCTGACAGTCTGTC
>TCONS_00019381
GCTCCACTCTGCCTCGTGTTCTTCCTCTGTGTTCTCCGTGTCGTGTGGAGGCTATGTTCGCTCACTCCTCTGAGTCCTGTGATGGAGATCCGGCTGGCGGAGGAGGCTCCTGTCTGCTGTCCTTCCAACCCGGAGACACACTTGGCCTGCTGATCAGTGAACCCCGAGACGGTTGGCACTACGGGCAGAACGAACGCACCGGACGAAAAGGCTGGTTTCCCTTCTCCTACACGCAGCCGTGCCCGAACACTCCTGGACAAGACATCAG

Function

symbol description
zgc:158689 Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within plasma membrane organization. Predicted to be active in cytosol and nucleoplasm.

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:2000251 positive regulation of actin cytoskeleton reorganization biological_process
GO:0007009 plasma membrane organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1902 Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within plasma membrane organization. Predicted to be active in cytosol and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000017785

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019378 False 2403 mRNA 0.53 16 5678071 5710821
TCONS_00019379 False 624 mRNA 0.50 7 5678072 5691238
TCONS_00019380 False 1217 mRNA 0.53 10 5678139 5700393
TCONS_00019381 True 268 mRNA 0.59 2 5702749 5705846

Neighbor

gene id symbol gene type direction distance location
XLOC_009663 NA coding upstream 41695 5612547 ~ 5636376 (+)
XLOC_009662 zgc:91890 coding upstream 72730 5597600 ~ 5605341 (+)
XLOC_009661 macf1b coding upstream 95307 5579744 ~ 5582764 (+)
XLOC_009660 CR848788.2 coding upstream 133333 5539189 ~ 5544738 (+)
XLOC_009659 NA coding upstream 175372 5499274 ~ 5502699 (+)
XLOC_009665 ccka coding downstream 64156 5774977 ~ 5779201 (+)
XLOC_009666 ulk4 coding downstream 188057 5898878 ~ 6182429 (+)
XLOC_009667 cmtm8b coding downstream 626131 6336952 ~ 6347186 (+)
XLOC_009668 NA coding downstream 684482 6395303 ~ 6421449 (+)
XLOC_009669 sall3a coding downstream 922148 6632969 ~ 6654587 (+)
XLOC_009654 FO722028.1 non-coding upstream 803590 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 966343 4708735 ~ 4711728 (+)
XLOC_009647 NA non-coding upstream 1118159 4559111 ~ 4559912 (+)
XLOC_009644 NA non-coding upstream 1250777 4422621 ~ 4427294 (+)
XLOC_009675 NA non-coding downstream 1407326 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 1515855 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 non-coding downstream 1516763 7227584 ~ 7294953 (+)
XLOC_009681 NA non-coding downstream 1804029 7514850 ~ 7515507 (+)

Expression


Co-expression Network