G217033


Basic Information

Item Value
gene id G217033
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 7438824 ~ 7439461 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU246204
CGGCGCCTTTACTCCGGCAATTTTGGACATACAAATAAGAGTTATATATTATTAAAAACTGTGGAATGTATTTTTATTTGTGGCCATGCCCACGGAGCGCACACACTATTCAAATGCAAATTCTGAGGCGATCAGTGCAACAGAGAGTGAGTGAATTATCTCACAGATTTGAGAATCATAGTGACCAGATCAGAGGTGTAAAGAATACCTGAAAACCATACTTGAGTAAAAGTACAGATACCTTACATCAAAAATGACTCCATTATAAGTTACAAGTAACCAATTCCAATACGACTTGAGTAAAAGTCTTAAAGTATCTGATTTTAACAGTACTTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU246204 True 338 lncRNA 0.36 2 7438824 7439461

Neighbor

gene id symbol gene type direction distance location
CI01000050_07338022_07340567 ANGPTL7 coding downstream 97813 7337445 ~ 7341011 (-)
CI01000050_07307744_07309403 NA coding downstream 128287 7307411 ~ 7310537 (-)
CI01000050_07239689_07244721 NA coding downstream 194103 7239615 ~ 7244721 (-)
CI01000050_07207399_07217984 OGG1 coding downstream 220840 7207175 ~ 7217984 (-)
CI01000050_07155856_07157697 NA coding downstream 281127 7154965 ~ 7157697 (-)
G216986 NA non-coding downstream 87332 7349873 ~ 7351492 (-)
G216882 NA non-coding downstream 223837 7184655 ~ 7214987 (-)
G216879 NA non-coding downstream 265074 7168326 ~ 7173750 (-)
G216935 NA non-coding downstream 270771 7167835 ~ 7168053 (-)
G216930 NA non-coding downstream 280649 7157750 ~ 7158175 (-)
G217050 NA non-coding upstream 50676 7490137 ~ 7494279 (-)
G216878 NA non-coding upstream 73902 7513363 ~ 7513944 (-)
G217065 NA non-coding upstream 93025 7532486 ~ 7532699 (-)
G216931 NA other downstream 273423 7164095 ~ 7165401 (-)
G216408 NA other downstream 1082313 6356017 ~ 6356511 (-)
G216093 NA other downstream 1886721 5489557 ~ 5552103 (-)
G215935 NA other downstream 2365715 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 2825932 4563687 ~ 4581278 (-)

Expression


Co-expression Network