CI01000051_00131867_00138611 (ZNF513)


Basic Information

Item Value
gene id CI01000051_00131867_00138611
gene name ZNF513
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 130386 ~ 138790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_00131867_00138611.mRNA
ACTGTAAGATTAGCATGTTAGCCCCTAAATGCGCCATGTATCTGTTAGAGGGGTTGTTGACGTGCATGTCAGTACAGTAACGACTGGTATTTCATTGTTTCCAAGGCTACTTTGGAGAATGAGTTGATCATTGGCGAGGGAATCCAGAGGAGGTTGCAAATAAAAAGGCTGACTGGAAGATGCCAAGAAGAAAACAGCAGAATCCACAACCTGTCAAGTTGGATTCTGAAGATGGTTTAGGCACTGTACGTCCAGCAAGCCTTACCTTTGAGAGCGACTTTCTCCTGGGACAAGAACTCGAGTTCTCAGATCCTGACAATGACAGCAAGATCATAGGCCTTGAAAAGTTCTCAGCTGACATCAGTCTGCCTGGCTTCCCCCTGGGAGACGAGGAGAGCTCCCCCTTCAGCCGCCTCAGTATGGAGAGTGACGCTGACGACCTCCGCGCAACCGAAAGCGAGCGTGAAGAGAGGGTTTCTGAGTCTGCCTTTCCCTCTTACCTCTCTTGCAGGGGCTGTGGTCAGCTCCTGGAAGACCCCCTGGGACCCGGCATGGACTTGGTGGGGCCCTACTGCATGCGCTGCTGCAAAGGGAATGCGGACGGCGTTGTGGACAGGAAGCTCTGCTCGGGCTTAGGCTTACAAGCGGAGTCTAGAGGGGGAGGGAATGAGGGCGCTGGTGGTGAGGATGGTACCCTAAAGCTCCACTCGTGCACGCTCTGTGGATTCACTTCGCGCTACACTAACCACGTTAAGAGGCACATGAAGACACACAACGGTGAAAAGCCATACGGGTGTCCGCTGTGCTCCTATGCGTCGGCGCAACTAGTGAACCTGCAAAGGCACTTGCGCATACACACCGGAGAAAAGCCCTATAAATGCAATCACTGCACATTTGCATGCAGTTCCTTGGGGAACCTGAAGAGGCACCAGCGCATGCATGCAGCCGTAAGCCCGGGTCAGAGTGCCACTCAGCCGGTCAGTGGCAGCTGTTTAAATCACACTACTGTGGGTCAGAAGGAAAAGGAAGGGGCTCCTGCTCCCACTGATGAAGGTGCTGTGCAATCTGTCTCACGTCCCCACGTGGGAAGAGATGGGAACTACTTGCAGACCTTTGATGGCCTCAGGCTTGCACAGCAGTCATCGACAGGGGTGTTGCAGTCAGGACAGGCTCCATCTGAACCCCCCATGTTCTTCCCCTTCACTTGTCGTCTATGCGGCATGGCCCTGGATGACGAGGACGGATCCTCAGCCCAGATCTGCGCCAAGTGCACCCTGGAGATGCTGACTAAGGACACACCAGGTTGCCCCGCTGAGCGAGGGGACAAGGTCTACACCTGTGCTGCCTGCCCCTTTCTCACCCACTACCCAAACCACCTGGCCCGCCACATGAAGACCCACAGCGGAGAGAAGCCATACAAGTGCCCGCAGTGCGACTACGCCTCCGCCCACTTTGACAACCTCAAGCGGCACCATCGTGTGCACACTGGGGAGAAACCCTACAAGTGCCACCTGTGTGACTATGCCTGCGGCAACCTGGCTAATCTCAAGAGGCACCAACGGGTGCATTCGGGTGCCAAACCCTTTCAGTGTGCAATCTGCAACTACAGCTGCAATCAGAGTATGAACCTGAAGCGGCACATGTTGCGCCACACGGGTGAGAAGCCCCATAAGTGCCAAGAGTGTGGCTACACCACTGGCCACTGGGACAACTACAAACGACATCAGAAGAAGCACAGCCTGACTACAGATGGCTGGGTTAAAGTGCAGATGCCTGGAAATGAGGAAGAGGTGGAGGACGAGGAAGAGGTGTAGCCTTTTATTGCAAGACAGTCGTCCATATGAGATTTTACTAAATTGTTGGTTGACCTTCTTTTCTTTTGTCCCCAAAATTATTTTTGGAATTGTTCACAAGCTGCTACATGAAGTCATGCACAAATTTAAAGGGATAGTTCACCCAAAAATGATTTACTCAACCTCAAGCCATCCTAGGTGTATATGACAATCTTCTTTCAGACGAACACAATCAGAGATATAATTAAAAATATTCTGGCTCTTCCAAGCTTTATAATGGATTACTTTTATGATGGATGGATGCGCTTTTTTGGACTTCAAAATAAGGAGCCCCATTCACTACCATTAAAAAGCTCAGAAGAGCCAGGATATTTTATAATATAATTTCAATTGTCTTCGTCTGAAAGAAGATAGTCTTATACACCTAGGATGGCTTGAGGGTGAGTAAATTATGGGTCAGTTTTCATTTGTGGATGAACTATCCCTTAAACGTTACCTGAATGTCCTAATGTCGGGGTTGTCAAATCCTGCTCCTGGAAGGCCAGGAGACTCTAAATAAACACGCTGAAGCAGCTAATCAAGGTCTTCAGGCTTATTCAAAACTTCCTGACAGGTCTGTGGGAACCGGTTGACGCTAAACTCTGCAGGAAGGTGGTCCTCCAAGGAGCAGTATTGGACATTCCTGATTAATGCCTTTGAACAAGGCAAAATGTTTGTGTTACCCAAAGCTCTCTAAGAGCGTTCTGAGCCTGATTGTGGTTCATTTATCAGTGCCAAACAGACACTACTGCACCACTGCCATAGGAAGTTCTTCTTTAAGCCTGGCGCAACGTTGCATGCACTTAAGTTTACCTTGGTTGACTGTTTTGAGGTTTTATGTAATTGATCATTTTTCATTCTTCTCAACCATACTGGTGAAAATGCCTTCAAAGATCATCTTTGATCATATTGTTTTTGCTCTCAATAATTCTGGGGGATTGTGTTGCCTTTTATTGTTGTGTGTATTTTATTGATTGTGAAAAATGCCATTTGTCTGAGTTTACTTGAAGCAAAATGTTGCATAGTGGATTTTTGTGTCATGCTGAACATAGAGCTTTTATTTTTGTATGTAATTTTATTTTTTATCTCTTGAGGAATGTATTTGCCACCCTTAGCTATACTGAAGGACGACAGTAAACGTAAACCCAATTATGCAGTTAAACCTTAAAGTTGCCAAGAAATGAATGAACATTGAAATCTTTTAGGTGTGTGGTGCTTGAGTGTTTTCTTGTTATTATGCAGTGGTTTCATTAATGCCTTAAATATTCTCAAATAAA
>TU246659
TACACCTAGGATGGCTTGAGGGTGAGTAAATTATGGGTCAGTTTTCATTTGTGGATGAACTATCCCTTAAACGTTACCTGAATGTCCTAATGTCGGGGTTGTCAAATCCTGCTCCTGGAAGGCCAGGAGACTCTAAATAAACACGCTGAAGCAGCTAATCAAGGTCTTCAGGCTTATTCAAAACTTCCTGACAGGTCTGTGGGAACCGGTTGACGCTAAACTCTGCAGGAAGGTGGTCCTCCAAGGAGCAGTATTGGACATTCCTGATTAATGCCTTTGAACAAGGCAAAATGTTTGTGTTACCCAAAGCTCTCTAAGAGCGTTCTGAGCCTGATTGTGGTTCATTTATCAGTGCCAAACAGACACTACTGCACCACTGCCATAGGAAGTTCTTCTTTAAGCCTGGCGCAACGTTGCATGCACTTAAGTTTACCTTGGTTGACTGTTTTGAGGTTTTATGTAATTGATCATTTTTCATTCTTCTCAACCATACTGGTGAAAATGCCTTCAAAGATCATCTTTGATCATATTGTTTTTGCTCTCAATAATTCTGGGGGATTGTGTTGCCTTTTATTGTTGTGTGTATTTTATTGATTGTGAAAAATGCCATTTGTCTGAGTTTACTTGAAGCAAAATGTTGCATAGTGGATTTTTGTGTCATGCTGAACATAGAGCTTTTATTTTTGTATGTAATTTTATTTTTTATCTCTTGAGGAATGTATTTGCCACCCTTAGCTATACTGAAGGACGACAGTAAACGTAAACCCAATTATGCAGTTAAACCTTAAAGTTGCCAAGAAATGAATGAACATTGAAATCTTTTAGGTGTGTGGTGCTTGAGTGTTTTCTTGTTATTATGCAGTGGTTTCATTAATGCCTTAAATATTCTCAAATAAAACAGTTTGTGTTGAAACTTCTGCTTAACTTCACTTTCAGTCACAAAACTTAAGTTACTAGTTGCCAGCAGGATTTGATGAAGATGCTGAGACAGGCAGTATGTAATCCTCACACTTTCATAATGAGAGCTGTAATCCTCCCTGTGCTCTGCTGCGAACAAAACCAGTAAACATGCTAATGAAGACA
>TU246660
TACACCTAGGATGGCTTGAGGGTGAGTAAATTATGGGTCAGTTTTCATTTGTGGATGAACTATCCCTTAAACGTTACCTGAATGTCCTAATGTCGGGGTTGTCAAATCCTGCTCCTGGAAGGCCAGGAGACTCTAAATAAACACGCTGAAGCAGCTAATCAAGGTCTTCAGGCTTATTCAAAACTTCCTGACAGGTCTGTGGGAACCGGTTGACGCTAAACTCTGCAGGAAGGTGGTCCTCCAAGGAGCAGTATTGGACATTCCTGATTAATGCCTTTGAACAAGGCAAAATGTTTGTGTTACCCAAAGCTCTCTAAGAGCGTTCTGAGCCTGATTGTGGTTCATTTATCAGTGCCAAACAGACACTACTGCACCACTGCCATAGGAAGTTCTTCTTTAAGCCTGGCGCAACGTTGCATGCACTTAAGTTTACCTTGGTTGACTGTTTTGAGGTTTTATGTAATTGATCATTTTTCATTCTTCTCAACCATACTGGTGAAAATGCCTTCAAAGATCATCTTTGATCATATTGTTTTTGCTCTCAATAATTCTGGGGGATTGTGTTGCCTTTTATTGTTGTGTGTATTTTATTGATTGTGAAAAATGCCATTTGTCTGAGTTTACTTGAAGCAAAATGTTGCATAGTGGATTTTTGTGTCATGCTGAACATAGAGCTTTTATTTTTGTATGTAATTTTATTTTTTATCTCTTGAGGAATGTATTTGCCACCCTTAGCTATACTGAAGGACGACAGTAAACGTAAACCCAATTATGCAGTTAAACCTTAAAGTTGCCAAGAAATGAATGAACATTGAAATCTTTTAGGTGTGTGGTGCTTGAGTGTTTTCTTGTTATTATGCAGTGGTTTCATTAA

Function

symbol description
znf513 Enables transcription cis-regulatory region binding activity. Involved in retina development in camera-type eye. Located in nucleus. Implicated in retinitis pigmentosa 58.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_00131867_00138611.mRNA False 3109 mRNA 0.47 4 130572 138790
TU246659 False 1083 lncRNA 0.39 1 130386 131468
TU246660 True 874 lncRNA 0.39 1 130595 131468

Neighbor

gene id symbol gene type direction distance location
CI01000051_00083434_00086769 NA coding downstream 43213 82720 ~ 87359 (-)
CI01000051_00036318_00057051 SCARA5 coding downstream 73521 36318 ~ 57051 (-)
CI01000051_00000977_00002147 NA coding downstream 128033 810 ~ 2539 (-)
CI01000051_00224709_00227613 NA coding upstream 85717 224507 ~ 227613 (-)
CI01000051_00262483_00263385 BLK coding upstream 123651 262441 ~ 263385 (-)
CI01000051_00278614_00302552 NA coding upstream 139402 278192 ~ 304373 (-)
CI01000051_00334616_00337009 SOX7 coding upstream 195263 334053 ~ 337197 (-)
CI01000051_00346827_00352024 NA coding upstream 208037 346827 ~ 352381 (-)
G217411 NA non-coding downstream 980 129112 ~ 129592 (-)
G217430 NA non-coding downstream 1692 128614 ~ 128880 (-)
G217410 NA non-coding downstream 32864 80788 ~ 97708 (-)
G217426 NA non-coding downstream 53285 73998 ~ 77287 (-)
G217453 NA non-coding downstream 59052 70343 ~ 71520 (-)
G217468 NA non-coding upstream 2715 141505 ~ 141743 (-)
G217425 NA non-coding upstream 19167 157957 ~ 160923 (-)
G217473 NA non-coding upstream 28396 167186 ~ 167430 (-)
G217427 NA non-coding upstream 31693 170483 ~ 170754 (-)
G217475 NA non-coding upstream 32472 171262 ~ 171494 (-)
CI01000051_00394082_00407612 MTMR9 other upstream 256441 392720 ~ 407612 (-)
CI01000051_00560810_00563417 NA other upstream 423406 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1570508 1784416 ~ 1787760 (-)

Expression


Co-expression Network