XLOC_009668


Basic Information

Item Value
gene id XLOC_009668
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6395303 ~ 6421449 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021880
TCCATTTTAAAAActgtaacatttatttaagtATCACCATCCACAACACATATAATTCTAATTCCATTCTTCGTCAGTTAATATTGCAGCAGTactactttcattcatttttcacaGCAGTTACGCATTGCATACTCACAACAGACGTCTTTACACCACAAAACTAAGTTACTGTCTGCACATTAATATTCAGTTCTATAAAAACCTCACTCAACTCTCAGCATCAGTACCACAActacatccaaaataaattagcaaacgaCGTACAATTAAGGATACCTCCTTCTCTAGCATACAGTGTTAAACTAGTTAAAAGACGCTTAAAATGGGCAGCGTTCATTTTCCTTAGGAAATCTTGCAAATAGCTGCCTTGTTAGGACTTAATCTCAAACTGTGCGTTCCCTTATTTGTTCTCATGAAATCATTGCTTATGTGTGTGTCTTTTCAATGGAGTGCATCCCTAGTGAGGtttagtctgtgtgtgtttgtgaactgCCTGTAAGCAAGCGGAGGCCcagctttttttttgtgttcacacAAAGTAGCCTTTGTCCGTCAATGTCGTTGCTCTCTCAGTTTGCACAAAGGCGAccccgcgcgcacacacacacacacacgcataaacacacaaacgcacacactctTCAGTCCTCCTTCACATTGTTGTTGGAATGCAGGTCATGGTTTTCAGGCTTGAAGCTCTTGGGTTTGCCGGGCAGGAGGATCATAGCCAGAATGCTGATGACATGCACATGAAAGTACATCGATCTAAAGGAACAGAGAACATACCAAAAGTATCTG
>TCONS_00021881
CCATTTTAAAAActgtaacatttatttaagtATCACCATCCACAACACATATAATTCTAATTCCATTCTTCGTCAGTTAATATTGCAGCAGTactactttcattcatttttcacaGCAGTTACGCATTGCATACTCACAACAGACGTCTTTACACCACAAAACTAAGTTACTGTCTGCACATTAATATTCAGTTCTATAAAAACCTCACTCAACTCTCAGCATCAGTACCACAActacatccaaaataaattagcaaacgaCGTACAATTAAGGATACCTCCTTCTCTAGCATACAGTGTTAAACTAGTTAAAAGACGCTTAAAATGGGCAGCGTTCATTTTCCTTAGGAAATCTTGCAAATAGCTGCCTTGTTAGGACTTAATCTCAAACTGTGCGTTCCCTTATTTGTTCTCATGAAATCATTGCTTATGTGTGTGTCTTTTCAATGGAGTGCATCCCTAGTGAGGtttagtctgtgtgtgtttgtgaactgCCTGTAAGCAAGCGGAGGCCcagctttttttttgtgttcacacAAAGTAGCCTTTGTCCGTCAATGTCGTTGCTCTCTCAGTTTGCACAAAGGCGAccccgcgcgcacacacacacacacacgcataaacacacaaacgcacacactctTCAGTCCTCCTTCACATTGTTGTTGGAATGCAGGTCATGGTTTTCAGGCTTGAAGCTCTTGGGTTTGCCGGGCAGGAGGATCATAGCCAGAATGCTGATGACATGCACATGAAAGTACATCGATCTAAAGGAACAGAGAACATACCAAAAGgaaaaaaaaaactggacagACTCGGCTCCCAATATGCCACTTCAATCCAGCTCTGAATGCCATGCTACAACCCACGGTTCCCGCTCGAGGAGGATTACACAGACTTAGGCAGCACAGTTCTTCCACATCATTTCCCACACTGCTTCTGGTTATACAAAAGGCCTTCTGGGATAATTCATCAGCATAATTTTGTGCCCCTTGTTATTCCAACGCTTATTAAATTAGCTGTCATACAAAAAAAgccatgtatttacattttaatagcaatgCCTGTTGATTTAATCAGTGTTTTGAGCATTTGTTTAaacataagttaaataaaaacatacgATGGGCTCATGTTACATGTTACAATGtgacattcattccttttccttcgacTTAAGCCCCGATCAGATCCCACGAATTTGTCATGATTTTGACATGATTTTCTTGACGTAGGGTGTTGTAATCGACAAATGAGCATCGTGACACAAGATTTAATAATTTCTTCTCTTGTGATGTGACATAGTTCACGACACCATGTCTGCGACGCTTCATGACACCATCGCAggaagtctagcatgtttaattctTATCTTGTTTTTCACTACGAATTCCGTCATGTGGGTGACACTGGGCATCAtttctcagttatatctgcgGGTGATGCCATTAATCAgcggtcaggtaatcaaaaataggctgcatatttacttatgggtgggtcacgggtggataagatcaatcattggttatCCAGTTAAACTCTGCTCTGCTATTTtaggatttccgcctggattttgcctacccaaatttaaaagcttcccaaatccacatgcagagg
>TCONS_00021882
CTGAGATTACTCTTGTGTGGTTTCACAACATGTGACAGAAAATGCAGCGCAACCAGCCCAACAGCACGAGTTAGATGTGAATGGCATAACAGTGATGCAGgaaaaaaaaaactggacagACTCGGCTCCCAATATGCCACTTCAATCCAGCTCTGAATGCCATGCTACAACCCACGGTTCCCGCTCGAGGAGGATTACACAGACTTAGGCAGCACAGTTCTTCCACATCATTTCCCACACTGCTTCTGGTTATACAAAAGGCCTTCTGGGATAATTCATCAGCATAATTTTGTGCCCCTTGTTATTCCAACGCTTATTAAATTAGCTGTCATACAAAAAAAgccatgtatttacattttaatagcaatgCCTGTTGATTTAATCAGTGTTTTGAGCATTTGTTTAaacataagttaaataaaaacatacgATGGGCTCATGTTACATGTTACAATGtgacattcattccttttccttcgacTTAAGCCCCGATCAGATCCCACGAATTTGTCATGATTTTGACATGATTTTCTTGACGTAGGGTGTTGTAATCGACAAATGAGCATCGTGACACAAGATTTAATAATTTCTTCTCTTGTGATGTGACATAGTTCACGACACCATGTCTGCGACGCTTCATGACACCATCGCAggaagtctagcatgtttaattctTATCTTGTTTTTCACTACGAATTCCGTCATGTGGGTGACACTGGGCATCAtttctcagttatatctgcgGGTGATGCCATTAATCAgcggtcaggtaatcaaaaataggctgcatatttacttatgggtgggtcacgggtggataagatcaatcattggttatCCAGTTAAACTCTGCTCTGCTATTTtaggatttccgcctggattttgcctacccaaatttaaaagcttcccaaatccacatgcagagg

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021880 False 801 lncRNA 0.41 2 6395303 6421449
TCONS_00021881 False 1620 lncRNA 0.40 2 6395304 6412819
TCONS_00021882 True 926 lncRNA 0.41 2 6401591 6412819

Neighbor

gene id symbol gene type direction distance location
XLOC_009667 cmtm8b coding upstream 48117 6336952 ~ 6347186 (+)
XLOC_009666 ulk4 coding upstream 212874 5898878 ~ 6182429 (+)
XLOC_009665 ccka coding upstream 616102 5774977 ~ 5779201 (+)
XLOC_009664 zgc:158689 coding upstream 684482 5678071 ~ 5710821 (+)
XLOC_009663 NA coding upstream 758927 5612547 ~ 5636376 (+)
XLOC_009669 sall3a coding downstream 211520 6632969 ~ 6654587 (+)
XLOC_009670 znf407 coding downstream 305746 6727195 ~ 6747274 (+)
XLOC_009671 znf236 coding downstream 328840 6750289 ~ 6800632 (+)
XLOC_009672 arhgef2 coding downstream 442795 6864244 ~ 6933178 (+)
XLOC_009673 eaf1 coding downstream 522862 6944311 ~ 6955545 (+)
XLOC_009659 NA non-coding upstream 892604 5499274 ~ 5502699 (+)
XLOC_009654 FO722028.1 non-coding upstream 1520822 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 1683575 4708735 ~ 4711728 (+)
XLOC_009647 NA non-coding upstream 1835391 4559111 ~ 4559912 (+)
XLOC_009644 NA non-coding upstream 1968009 4422621 ~ 4427294 (+)
XLOC_009675 NA non-coding downstream 696698 7118147 ~ 7118568 (+)
XLOC_009677 NA non-coding downstream 805227 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 non-coding downstream 806135 7227584 ~ 7294953 (+)
XLOC_009681 NA non-coding downstream 1093401 7514850 ~ 7515507 (+)
XLOC_009682 CT574585.2 non-coding downstream 1143078 7564527 ~ 7566095 (+)

Expression


Co-expression Network