CI01000051_00334616_00337009 (SOX7)


Basic Information

Item Value
gene id CI01000051_00334616_00337009
gene name SOX7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 334053 ~ 337197 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_00334616_00337009.mRNA
AGTGAATCACAGCTTCAGAGGGGGAGTCGAACACCAAACACTGATCTCTCTCACAGTGCTCTTCACTCAAACTCATCTCTTACTGCGCTTTTACTTTGCTTTAGATTCAAAACTGAAAGAGAATCTCTAGGTCACATTCGCGCCCTAGAAACAAAGTTTGAGACAAAAGGGAAGTTTTGGGAGCGCACATGGCTGCTCTAATTAGCGCGTACTCGTCCTGGCCGGAGAGCTTTGAGTGCTCTGCGGGAAACGCGGACGTACCTGACGGACACACCTCCCACAGAGCTCCCGCGGACAAGGTGTCGGAGCCGCGCATCAGGAGACCCATGAACGCCTTCATGGTGTGGGCCAAAGATGAGCGCAAGAGGCTCGCGGTGCAAAACCCCGATCTCCACAACGCGGAGCTAAGCAAGATGCTGGGAAAGTCATGGAAAGCTTTAACTCCACCGCAGAAGAGACCGTACGTGGAGGAAGCGGAGCGTCTGAGGGTGCAGCACATGCAGGACTACCCCAATTACAAATACCGTCCCCGTAGGAAGAAGCAGCTGAAGCGCATCTGTAAACGCGTGGACCCCGGCTTCCTCCTGACCACCCTCGGTCCTGACCAGAACTCCCTTCCGGACCCACGAGGCTGCTGTCACCCACTGGATAAAGATGAGGAGAGCGGCGTGAGCGGCGGCGGCGGCTTCGGCTCTCCCAGCGCGGCTCTGCCCGGCGTCAGGGTCTTCAGAGATCCCGCGAGCTCCAACAGCAGCTTCGACACGTACCCGTACGGCCTGCCCACGCCGCCTGAGATGTCTCCTCTGGACGCCGTGGATCACGAACACCAGTCCTACTACTCATCCTCCTCCACCAGCTCCTGCTCGTCTTCCGCCTCTTGCCCAGATGACAGGCGTCCCACGCCGGCACACATGAGCAGTCCTCCTCCTTACCATCCCGATTACTCCCAACAGGCACCTCTGCACTGCGGGAGCTCACATCTGGGCCACATCCCGATGTCCCACCAGGGAAGTGGGGCGACTTTTATCCCAGCACATCCACTGTCCTATTACAGCCCGTCGTTCCCACAGGTTCAGATCCATCATGGGCACCAGGGGCACCTCGGCCAGCTCTCACCCCCTCCGGAACAGGGCCACCTGGAGGGTCTGGACCAGCTGAGCCAGGCTGAATTGCTGGGCGAGGTCGACCGAGACGAGTTTGACCAGTACCTAAATTCCAATAGTTATCACCCCGAGCAGGGTGGGATGACGGTCACGGGACACATCCAGGTAACGCCGGCTTCCGTTTGCTCGAGCAGCGCTTCGGAAACCAGTCTCATCTCCGTACTGGCCGATGCCACGGCAGCCTACTACAACAACTACAGCATTTCATAAACGCCAAAACAGGGACAGTTGACACAGACAGAGACTGTGGGTCAGCAGTGTGACTGGCAGGTGAAAGGGGGGCTGCGGAGGGAGCGGAAAAGAGAAGCTACAGGAAGTCAAAGGACACCTCAGGGATGCATAGATAAAAAAAACACTGAAGTTCATTCCCATCTTTGTTTCCAAAAAGAGAACGGAAGTAAAAAAAAAAAGGACAAACATAGAAATGCTCTCATATCTTGCCACAAAAGCATGTACATATGCGATAAAGCTTATTTATATATCGAATTGCTTTGCATTAAAGCTTACTGTATTGTTTTTTTCAGTCCAGATATATTCATGTTTTTTTTTTTTTTTTTCAAACCTCAATTGTTTTACCTCAAGAATTATTTAAGTGAGGCTGGTCTCTTCCTTCATTAGGACTTGATTTTGAAGGAAATTTGGCCTTTTCTTTTCCCTTTACATTCATTTTAAAAATGTATATGTATACTCATAAACAGTTAAAAGACGAATAATAATAATGAATACTATTGTATGCCAATTTAGGTTTGCCATATTAATTTAATTCAAATAAA

Function

symbol description
sox7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within artery development and vasculogenesis. Predicted to be located in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; hindbrain; intermediate cell mass of mesoderm; and mesoderm. Orthologous to human SOX7 (SRY-box transcription factor 7).

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_00334616_00337009.mRNA True 1936 mRNA 0.51 2 334053 337197

Neighbor

gene id symbol gene type direction distance location
CI01000051_00278614_00302552 NA coding downstream 29680 278192 ~ 304373 (-)
CI01000051_00262483_00263385 BLK coding downstream 70668 262441 ~ 263385 (-)
CI01000051_00224709_00227613 NA coding downstream 106440 224507 ~ 227613 (-)
CI01000051_00131867_00138611 ZNF513 coding downstream 195263 130386 ~ 138790 (-)
CI01000051_00083434_00086769 NA coding downstream 246694 82720 ~ 87359 (-)
CI01000051_00346827_00352024 NA coding upstream 9630 346827 ~ 352381 (-)
CI01000051_00357855_00378052 NA coding upstream 19637 356834 ~ 378052 (-)
CI01000051_00383638_00388102 TDH, TDH.S coding upstream 46125 383322 ~ 388102 (-)
CI01000051_00394082_00407612 MTMR9 coding upstream 56114 392720 ~ 407612 (-)
CI01000051_00478608_00478959 NA coding upstream 141033 475707 ~ 482200 (-)
G217553 NA non-coding downstream 35785 298050 ~ 298268 (-)
G217417 NA non-coding downstream 115898 216869 ~ 218155 (-)
G217420 NA non-coding downstream 117286 215484 ~ 216767 (-)
G217419 NA non-coding downstream 118929 214080 ~ 215124 (-)
G217424 NA non-coding downstream 120201 213614 ~ 213852 (-)
G217532 NA non-coding upstream 59821 397018 ~ 397424 (-)
G217531 NA non-coding upstream 76649 413846 ~ 414972 (-)
G217573 NA non-coding upstream 90827 428024 ~ 428243 (-)
G217574 NA non-coding upstream 92107 429304 ~ 429545 (-)
CI01000051_00560810_00563417 NA other upstream 224999 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1372101 1784416 ~ 1787760 (-)
G218728 NA other upstream 2190146 2527343 ~ 2546459 (-)
G218861 NA other upstream 2503073 2840270 ~ 2840632 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017251 sox7 coding NC_007131.7 CM002904.2 19066596 ~ 19080593 (+)
rainbow trout (Oncorhynchus mykiss) LOC110522657 LOC106608338 misc NC_048568.1 CM023222.3 42913317 ~ 42916945 (-)
bowfin (Amia calva) AMCG00003447 LOC107736623 coding CM030121.1 CM030121.1 3698323 ~ 3704894 (+)