CI01000051_00357855_00378052


Basic Information

Item Value
gene id CI01000051_00357855_00378052
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 356834 ~ 378052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_00357855_00378052.mRNA
CTCGTCGTAAACAGAAGTGGTCTGTGGACCCCAGAAACAGCTCGTGGAGCAACGATGAGTCTAAATTTGGACAGAAGATGCTGGAAAGTATGGGCTGGGCCAAAGGAAAGGGTCTTGGCAAGAGTGAACAGGGGTCTACTGAACACATTAAGGTTAAAGTCAAGAACAACAAACTGGGTTTGGGCACTGCTATAAACAACGAGGACAACTGGATTGCCCACCAGGATGATTTTAATCAACTCCTTGCTGAGCTTAACAACTGCCATGGACAGAACCACACTGACAACTCCACACAGGAACAAGGGTTTAGTTTGGTGGAGAAATCAAAGACATCCAAGAAAAGGGTCCATTACATGAAATTCACTAAAGGAAAGGACCTGTCCAGTCGTAGCAAAACGGACCTGGCTTGTATTTTTGGGAAGCGATCGAAACAAGAAATAAGAGACCAAGATGAGAGACGGCTGACAGGACTATGGGGTGAAAGAGGAGAGAGCGGGTGCAAATCCGTTAAGGGGATTTCAGTGGGATCCCTGCCTACAGTGACTCATGTGTGGAGTCAGACGGCACGCTATGACACGGCTCATTATCAGCCTGCTGCGAGCGGCTCACGTGAAAGCAGAGGCTGTGTTTCAGGGGTTGGCGTGACCCCCTGTGGCCTCTCCCACTCCCACGGCAGCTCTAACACAAAGCCCTCAGACTGGAGGGTGGTACCTGTAGCTGCTCTGAATCAGCCCACGCCCGTCCTCATGAAGGATCGCCGGCCAGTTGACTCGCCGTTCCCCCGATGCCGCCACCTCACCAAATGAGGAGGAGAGGCTGCGCCATTTGGCAGATGTGGTGAAGGGGCGAGAGGCAGCGATGTCATTGGCCGCATGGGAGTCAGCTGGTGGGCGGAGTTGAGTACTGAAATGCTGCTGAGGATGCAGAAGTTGAGCTCTGAATATGCCAGCAGGCTGATGGAGCTCCCATTACAAAACCACTGAGTTTTATCCACATTATTACACACATTATAAATTATATGATATTTTGGAAACTACAGACCAAAAAGTTTACCTTCAGTCTCCATTCAACATTTATTTGCTAGCAAATTTGGCTTTTTATTTTAAACTTTCACAACTGTTTAAAAGTTTGCGGTTAAAGATTTTTAAATGGTTTTGAAGGAAGTTTCTTAAGGCTGCATTTATTTGATCAGAAAGTACTGTAAAAACAGTAATATTGTGAAATATTATTACAATTTAAAATAACATTTATTTATTGTAAAATATTTTTAAAAGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGATGATTTGCTGCTTAAGAAACATTTATTATTATCAATGATGAAAACAGTTGCGCTGCCTAATATTTATTATTTGTGGAAACTGATGATAATTTCTTCTTTGATGAATTGAAAGTTTAAAAGAATATTATTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAGTGTAACATTATGAATGTCTTTACTGTAACTTTTGATCAATTTAATGCGTCCCTGCTAAATAAAAGTATTAATTTCTTTCAAAATAATAATAATAAAAAAAATATTTACTGACCTAAACTTTTCAATGATAGTGTAAATATGTTGGAGCCATGGCTTAGTGGTTAGCATTGTGCTCTGGTGCTTATGTGGGTGTTGCAAGTTCAAATCTGGCTTGCAGCATTTCCAGATTACATTTTTCTATCCCTATATATTTTTTTCCTCTCTCCTTCTCATTTAAAAAGTAGTAAAATGCTAAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_00357855_00378052.mRNA True 1827 mRNA 0.40 7 356834 378052

Neighbor

gene id symbol gene type direction distance location
CI01000051_00346827_00352024 NA coding downstream 4453 346827 ~ 352381 (-)
CI01000051_00334616_00337009 SOX7 coding downstream 19637 334053 ~ 337197 (-)
CI01000051_00278614_00302552 NA coding downstream 52461 278192 ~ 304373 (-)
CI01000051_00262483_00263385 BLK coding downstream 93449 262441 ~ 263385 (-)
CI01000051_00224709_00227613 NA coding downstream 129221 224507 ~ 227613 (-)
CI01000051_00383638_00388102 TDH, TDH.S coding upstream 5270 383322 ~ 388102 (-)
CI01000051_00394082_00407612 MTMR9 coding upstream 15259 392720 ~ 407612 (-)
CI01000051_00478608_00478959 NA coding upstream 100178 475707 ~ 482200 (-)
CI01000051_00505008_00505358 FAM167AB coding upstream 126956 505008 ~ 505468 (-)
CI01000051_00520062_00525658 IF5, EIF5 coding upstream 141758 519810 ~ 525658 (-)
G217553 NA non-coding downstream 58566 298050 ~ 298268 (-)
G217417 NA non-coding downstream 138679 216869 ~ 218155 (-)
G217420 NA non-coding downstream 140067 215484 ~ 216767 (-)
G217419 NA non-coding downstream 141710 214080 ~ 215124 (-)
G217424 NA non-coding downstream 142982 213614 ~ 213852 (-)
G217532 NA non-coding upstream 18966 397018 ~ 397424 (-)
G217531 NA non-coding upstream 35794 413846 ~ 414972 (-)
G217573 NA non-coding upstream 49972 428024 ~ 428243 (-)
G217574 NA non-coding upstream 51252 429304 ~ 429545 (-)
CI01000051_00560810_00563417 NA other upstream 184144 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1331246 1784416 ~ 1787760 (-)
G218728 NA other upstream 2149291 2527343 ~ 2546459 (-)
G218861 NA other upstream 2462218 2840270 ~ 2840632 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017250 pinx1 coding NC_007131.7 CM002904.2 19006703 ~ 19059240 (+)