CI01000051_00383638_00388102 (TDH, TDH.S)


Basic Information

Item Value
gene id CI01000051_00383638_00388102
gene name TDH, TDH.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 383322 ~ 388102 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_00383638_00388102.mRNA
ATCAAACCGGCTGATAACGGCTCTAGTTGTGCGCAAAGGTATTGTTCAGCAAAAACAGTGGACACGAACAGAACAGTCCGCACAGACTTGGCACAATGAAGTCTTTAGAGGTCGGGACGGGTTGAAGGATGAGTTCGGCATCTTGCCACCGTGCTCGGCGTGGTGCCCGTGCAGCGCTCGCGCACAGTTCTCGCGTTCTGATTGGCTGGCGACGAAGGCGGGGTCGAATAAATACGCTCAAATTACATCCTTCGTTCCTTTCGTGCCTTTACATTTGCAAGTCGTCAGAGCCCTTAGTAAGGTGGCAAAGCAGGCCCTGCTGGCCCCTGCGTGTGGATGTCAGCCTCTGACGGTGGCGATACGCAACATCAGCTTTTCCCCGCGTCAGGTCACCTCTGGATCTGATGCCAGCTTTCATTCTGTGTCCTTCTCTGAGACGGACCACCCCAAAGTTCTCATCACAGGTGGCCTCGGGCAACTAGGGGTTGGGCTTGCTAAACTCTTAAGGAAGCGATTTGGAAAAAACAATGTGATCCTCTCAGATATTAGGAAACCACCAAGCAACGTCTTTCACAGCGGACCTTTTATCTACTCTGACATTCTGGACTACAAGAACTTGCGAGAGATCGTAGTAAATAACAGGATCACCTGGTTAGTGCATTACAGTGCTCTTTTAAGTGCCGTCGGGGAATCGAATGTGGCACTGGCACGAGCAGTCAACATCACAGGACTACACAACATCCTAGACATTGCAGCAGAACACGGGCTTCGGCTCTTTGTGCCCAGCACCATTGGTGCCTTTGGACCGACTTCACCTCGAAACCCCACACCTGACCTCTGTGTGCAGAGACCACGCACCATTTATGGCGTCTCTAAAGTCCATGCGGAGCTTATGGGGGAGTATTACCACCACCGCTATGGCCTTGACTTCCGCTGTCTGCGGTATCCCGGCATCATCTCTGCAGACTCGCAGCCCGGCGGTGGCACGACAGACTATGCTGTGCAGATTTTCCACGACGCCGTCAAGACCGGCAAATTTGAGTGCAACTTGAAGCCAGATACGCGGCTGCCCATGATGTACATTGATGACTGTTTGCGGGCCACGCTGGAGGTGATGGAGGCGCCGGCGGAAACGCTCAGTATGCGCACCTACAACATCAATGCCATGAGCTTCACTCCAGAGGAACTTGCAAATGAAGTCCAGAAACAGCTGCCTGACCTTCAGGTCACGTATGAGATCGACTCTGTACGACAGGCTATAGCTGACAGCTGGCCCATGAACTTTGATGACTCCAACGCCCGCAATGACTGGGGCTGGAAGCACGACTACGATCTGCCGGAGTTAGTCCAGACGATGCTCAACTTCATCGGCTCAGACTCCTGCATCGCTCAGGCCAACTGAGTCTGCTCATGGACAATGGAAATATGTACATATTACAAAGATTTATAGTGATGCAGAAGAGAGATCCATGGTCTGTAAATAGTCATATTCCTGTTCTCTTTTGTGTCATCTGTATGGACTAGCACAGGCTATGTATGTATAACTGCAGATTATACAAAGAGGTCTGGTCTCTTTTCTAGTCAGGGTTGAAAACCGCACAGGTATTTTGAAAGGTAAATGTTGGAAAAGAAGAAAAGGAATTGGTTTAAACCCGACGTGATCCGCTTGTGCTTTGCATTTAGTGAGATAGGATCATTATGTCTCCAGGAAAAATAAA

Function

symbol description
tdh Predicted to enable L-threonine 3-dehydrogenase activity. Predicted to be involved in threonine catabolic process. Is expressed in several structures, including immature eye; mucus secreting cell; nervous system; neural rod; and pancreas. Orthologous to human TDH (L-threonine dehydrogenase (pseudogene)).

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_00383638_00388102.mRNA True 1718 mRNA 0.50 9 383322 388102

Neighbor

gene id symbol gene type direction distance location
CI01000051_00357855_00378052 NA coding downstream 5270 356834 ~ 378052 (-)
CI01000051_00346827_00352024 NA coding downstream 30941 346827 ~ 352381 (-)
CI01000051_00334616_00337009 SOX7 coding downstream 46125 334053 ~ 337197 (-)
CI01000051_00278614_00302552 NA coding downstream 78949 278192 ~ 304373 (-)
CI01000051_00262483_00263385 BLK coding downstream 119937 262441 ~ 263385 (-)
CI01000051_00394082_00407612 MTMR9 coding upstream 5209 392720 ~ 407612 (-)
CI01000051_00478608_00478959 NA coding upstream 90128 475707 ~ 482200 (-)
CI01000051_00505008_00505358 FAM167AB coding upstream 116906 505008 ~ 505468 (-)
CI01000051_00520062_00525658 IF5, EIF5 coding upstream 131708 519810 ~ 525658 (-)
CI01000051_00560810_00563417 NA coding upstream 172666 560768 ~ 563417 (-)
G217553 NA non-coding downstream 85054 298050 ~ 298268 (-)
G217417 NA non-coding downstream 165167 216869 ~ 218155 (-)
G217420 NA non-coding downstream 166555 215484 ~ 216767 (-)
G217419 NA non-coding downstream 168198 214080 ~ 215124 (-)
G217424 NA non-coding downstream 169470 213614 ~ 213852 (-)
G217532 NA non-coding upstream 8916 397018 ~ 397424 (-)
G217531 NA non-coding upstream 25744 413846 ~ 414972 (-)
G217573 NA non-coding upstream 39922 428024 ~ 428243 (-)
G217574 NA non-coding upstream 41202 429304 ~ 429545 (-)
CI01000051_00224709_00227613 NA other downstream 140296 224507 ~ 227613 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1321196 1784416 ~ 1787760 (-)
G218728 NA other upstream 2139241 2527343 ~ 2546459 (-)
G218861 NA other upstream 2452168 2840270 ~ 2840632 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location