XLOC_009670 (znf407)


Basic Information

Item Value
gene id XLOC_009670
gene name znf407
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6727195 ~ 6747274 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019391
CTCTGTTCTGGTGTCTACATGCACGATTTTGAACGCTTTCAACTACAGAAGCATCACAGAAGCATGAAGCTAGCAGACTACGGTGCGCCGTTTGTGACCAAGAGCAGAACGCGCGAACTGAAGGAATACGAGCAACATTTCAGGATCTAAACCGTTCAGGTGCAAGATCTGCAACTTTTCCACTGCTCAGCTCGGGGATGCTCGCAACCATGTTAAGAGACATCTAGGCATGAGAGAGTACAAGTGTCACATCTGTGGATGGGCATTTGTGATGAAGAAACATCTCAACACTCATCTACTGGGCAAGCATGGACTGGGCCAGCCAAAAGAGAGGAAGTTTGAGTGCGAGTTGTGTGATCGGACCTTCAGTGAGAAATGGGCACTGAATAACCACATGAAACTACACACAGGAGACAAACCCTTCAAGTGTGCATGGCCATCGTGTCATTACGCCTTCCTGACTCTCTCTGCTATGAAGGACCATTACAGGACACACACAGGAGAGAAGTCTTTCTTGTGTGATCTCTGTGGATTTGCTGGAGGAACTCGTCATGCGCTGACCAAACATCGTCGCCAGCACACAGGTGAGCGGCCCTTCAAGTGTAAGCTGTGCAACTTCGCCTCAACTACACAGTCCCATTTGACGCGGCACAAGCGTGTGCACACGGGCGAGAAGCCTTATCGATGCCCCTGGTGCGACTACAGATCTAATTGCGCAGAGAACATCCGTAAACACATCCTGCACACAGGCAAGCACGAGGGGGTGAAGATGTATAACTGTCCTAAGTGCAGCTATGCCACCAATGCCCCGATGGACTTCAGAAACCACCTTAAAGAGACTCATCCCGACATCGAGAACCCAGATCTGGCTTATCTACATGCAGGAATTGTATCCAAGTCCTATGAGTGTCGTCTGAAGGGTCAGGGGGCATCTTTTGTCCAGGCAGAAACTGTGTTTTCCCCTGAGGAGAGCGAACTGGGTTCTGAGGCAGTTCAGCAGGTCATCATCATCCAGGGCTACAGTGGAGGAGAGGTGGCCATCGATCAGGCTCTGGAGCAGTCGGCCGCTGCCACTTTACAGACCCTCGCCATGTCCAGCCAGCTGGCCGAAGTGCTGCACATCACCGAGGACGGGCAGCTCATCACATCCGGTCAGGAAGTCTCTACAGGAGGCCAGACCACTCAATATGTCCTGGTGGAGTCATCCGGAGAAACCGTAGGAGAAGGAAGACCAGAAGTGGAGGCTGGACACAATGCATCTGAATCGTCTTCTGCTCTGGATGCTTTGCTTTGTGCTGTGACGGAGTTGGGCCAGCAGGCCTGCGCTGCTGAGGGAGAGATTTCCACCACTGCCGCGGCAGTGTCTGAAAGTCATCCAAAAGTGACGACCTCTCCAGCACAGAGCCAAAATGACGGGCAGGTATACGAGGAGAGGACAGAAGTGGGCATGGTGGCTCAGGTGGTGGGGTCTACCCATGAGCAACCGTCCGAGGAGATGCAAGAGGTGCTCCAGTTTGCAGCCAGTCAGCTGATGATGAAGGAAGGACTCACTCAAGTCAT
>TCONS_00019392
TGCGCCGTTTGTGACCAAGAGCAGAACGCGCGAACTGAAGGAATACGAGCAACATTTCAGGAAGGTTCATGGATCCTTCAAATAAAGTTTAGTAACATTCCTCCTTAACCGGCAGCATCATGGATGCTCCAAAACGGAAATTAAGGTCTGGAAAAGACATTTCAAAGGACAAAGGCCAGTCTAAGAGAAAAGCCAGTGATACTGGCACAGAAGATGTTTCCCCAGCACCTAAAAGTGCTAAAACTTCTGATGATTCAGGATATGTGTGTAATGAAGAAGAACATGAGCATGGTGAGACAGATACAGTGGGAGATCAGACAAGATCTATACAATCTAAAGAGTGTGACTCTTCAGAAACAAGCAATCCTTTAGTTTGTTCAGTGTGCAGTTTTGTTGCAAAAACTCAAACTGCACTGAAAATTCACTCAAAGCGGAAACACTCACAATTACAAGAAGCTGAAAACCAAACACACCTCTCAAAGGTGCATCTGGAGAGTTCTTCAGTGTCTCTGTCAGAAGAGGACAAACAATCGGATTGCTGCGTGGATGAAAACTCTGTGAAGGTTGTTGGAAACTCAAGATCTAGTCCTACTCAGATGTTGCTGGAAATAGTTGAACCCACTTCATGTAGATCAGGAACTGATGGTGAAGGTACAAATGAGGCCAACATAGGTGGCGTTACAAATGATGGAATGGATGAGAATGATAAAAGTCAAAAGCATTCAACGTCTAATACTCCACAAACATTAGCAGTTGGACACAGTACAGACTCTCATAGAAAAGAGACAAATTGTGATAGCGAGGAATGCATGACCAGCAAGAGCAGCAAAAAGATGTTAGGAAATCAGCATTCGTTAAAGACAACAGCATTGTTGAA
>TCONS_00019393
CCTAAAACCCTTGACGCTAAAAATGCCAAGTCAATTCCACGTATACGCTGTGAAGACTGTGGATTTTTGGCAGATGGCATAAGTGGCCTAAACGTTCACATCTCCATGAAGCATCCATCCAAGGAGAAGAATTTCCATTGCTTGCTTTGCGGAAAGTCCTTTTATACGGACAGCAACCTGCAACAGCACTTGGGCAGTGCAGCGCACATGCGCAATGAGAACGGAAGCATTGAAGAACTTGCAGAAGGAGGTGCCAGCTTTAAATGTGTCCGATGCAATGAGCCCTGCCAAACAGAGCAGGAACTATTTGTGCACATCAAAGAAAAACACGAGGAGCTGCTGAGGGAAGTGAACAAATACGTGCTGGAAGACACAGAGCAGATCAACCGAGAGCGGCAGGAGAACCAGGGCAGTGTGTGCAAGTACTGCGGCAAAGTATGCAAGAGCAGCAACTCCATGGCTTTCCTGGCTCACGTTCGAACACACACAGGATCTAAACCGTTCAGGTGCAAGATCTGCAACTTTTCCACTGCTCAGCTCGGGGATGCTCGCAACCATGTTAAGAGACATCTAGGCATGAGAGAGTACAAGTGTCACATCTGTGGATGGGCATTTGTGATGAAGAAACATCTCAACACTCATCTACTGGGCAAGCATGGACTGGGCCAGCCAAAAGAGAGGAAGTTTGAGTGCGAGTTGTGTGATCGGACCTTCAGTGAGAAATGGGCACTGAATAACCACATGAAACTACACACAGGAGACAAACCCTTCAAGTGTGCATGGCCATCGTGTCATTACGCCTTCCTGACTCTCTCTGCTATGAAGGACCATTACAGGACACACACAGGAGAGAAGTCTTTCTTGTGTGATCTCTGTGGATTTGCTGGAGGAACTCGTCATGCGCTGACCAAACATCGTCGCCAGCACACAGGTGAGCGGCCCTTCAAGTGTAAGCTGTGCAACTTCGCCTCAACTACACAGTCCCATTTGACGCGGCACAAGCGTGTGCACACGGGCGAGAAGCCTTATCGATGCCCCTGGTGCGACTACAGATCTAATTGCGCAGAGAACATCCGTAAACACATCCTGCACACAGGCAAGCACGAGGGGGTGAAGATGTATAACTGTCCTAAGTGCAGCTATGCCACCAATGCCCCGATGGACTTCAGAAACCACCTTAAAGAGACTCATCCCGACATCGAGAACCCAGATCTGGCTTATCTACATGCAGGAATTGTATCCAAGTCCTATGAGTGTCGTCTGAAGGGTCAGGGGGCATCTTTTGTCCAGGCAGAAACTGTGTTTTCCCCTGAGGAGAGCGAACTGGGTTCTGAGGCAGTTCAGCAGGTCATCATCATCCAGGGCTACAGTGGAGGAGAGGTGGCCATCGATCAGGCTCTGGAGCAGTCGGCCGCTGCCACTTTACAGACCCTCGCCATGTCCAGCCAGCTGGCCGAAGTGCTGCACATCACCGAGGACGGGCAGCTCATCACATCCGGTCAGGAAGTCTCTACAGGAGGCCAGACCACTCAATATGTCCTGGTGGAGTCATCCGGAGAAACCGTAGGAGAAGGAAGACCAGAAGTGGAGGCTGGACACAATGCATCTGAATCGTCTTCTGCTCTGGATGCTTTGCTTTGTGCTGTGACGGAGTTGGGCCAGCAGGCCTGCGCTGCTGAGGGAGAGATTTCCACCACTGCCGCGGCAGTGTCTGAAAGTCATCCAAAAGTGACGACCTCTCCAGCACAGAGCCAAAATGACGGGCAGGTATACGAGGAGAGGACAGAAGTGGGCATGGTGGCTCAGGTGGTGGGGTCTACCCATGAGCAACCGTCCGAGGAGATGCAAGAGGTGCTCCAGTTTGCAGCCAGTCAGCTGATGATGAAGGAAGGACTCACTCAAGTCAT
>TCONS_00019394
aatgtaTTTGAGTGCGAGTTGTGTGATCGGACCTTCAGTGAGAAATGGGCACTGAATAACCACATGAAACTACACACAGGAGACAAACCCTTCAAGTGTGCATGGCCATCGTGTCATTACGCCTTCCTGACTCTCTCTGCTATGAAGGACCATTACAGGACACACACAGGAGAGAAGTCTTTCTTGTGTGATCTCTGTGGATTTGCTGGAGGAACTCGTCATGCGCTGACCAAACATCGTCGCCAGCACACAGGTGAGCGGCCCTTCAAGTGTAAGCTGTGCAACTTCGCCTCAACTACACAGTCCCATTTGACGCGGCACAAGCGTGTGCACACGGGCGAGAAGCCTTATCGATGCCCCTGGTGCGACTACAGATCTAATTGCGCAGAGAACATCCGTAAACACATCCTGCACACAGGCAAGCACGAGGGGGTGAAGATGTATAACTGTCCTAAGTGCAGCTATGCCACCAATGCCCCGATGGACTTCAGAAACCACCTTAAAGAGACTCATCCCGACATCGAGAACCCAGATCTGGCTTATCTACATGCAGggaagcacatcatcatggagcaatttcaaatatccagtgaCCTTAAGGTGtccattgatgaagaatga

Function

symbol description
znf407 Predicted to enable metal ion binding activity. Orthologous to human ZNF407 (zinc finger protein 407).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-123 Predicted to enable metal ion binding activity. Orthologous to human ZNF407 (zinc finger protein 407).

Ensembl:

ensembl_id ENSDARG00000087536

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019391 False 1560 mRNA 0.53 9 6727195 6746242
TCONS_00019392 False 877 processed_transcript 0.41 2 6730506 6733636
TCONS_00019393 False 1907 mRNA 0.52 8 6735015 6746242
TCONS_00019394 True 621 mRNA 0.49 6 6738902 6747274

Neighbor

gene id symbol gene type direction distance location
XLOC_009669 sall3a coding upstream 72608 6632969 ~ 6654587 (+)
XLOC_009668 NA coding upstream 305746 6395303 ~ 6421449 (+)
XLOC_009667 cmtm8b coding upstream 380009 6336952 ~ 6347186 (+)
XLOC_009666 ulk4 coding upstream 544766 5898878 ~ 6182429 (+)
XLOC_009665 ccka coding upstream 947994 5774977 ~ 5779201 (+)
XLOC_009671 znf236 coding downstream 3015 6750289 ~ 6800632 (+)
XLOC_009672 arhgef2 coding downstream 116970 6864244 ~ 6933178 (+)
XLOC_009673 eaf1 coding downstream 197037 6944311 ~ 6955545 (+)
XLOC_009674 bbs9 coding downstream 210308 6957582 ~ 7062949 (+)
XLOC_009675 NA coding downstream 370873 7118147 ~ 7118568 (+)
XLOC_009659 NA non-coding upstream 1224496 5499274 ~ 5502699 (+)
XLOC_009654 FO722028.1 non-coding upstream 1852714 4874364 ~ 4874481 (+)
XLOC_009650 NA non-coding upstream 2015467 4708735 ~ 4711728 (+)
XLOC_009647 NA non-coding upstream 2167283 4559111 ~ 4559912 (+)
XLOC_009677 NA non-coding downstream 479402 7226676 ~ 7232180 (+)
XLOC_009678 CU466278.2 non-coding downstream 480310 7227584 ~ 7294953 (+)
XLOC_009681 NA non-coding downstream 767576 7514850 ~ 7515507 (+)
XLOC_009682 CT574585.2 non-coding downstream 817253 7564527 ~ 7566095 (+)

Expression


Co-expression Network