CI01000051_00824615_00825825 (KCTD1)


Basic Information

Item Value
gene id CI01000051_00824615_00825825
gene name KCTD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 824615 ~ 826076 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_00824615_00825825.mRNA
AGCTGCAGTCCAATACAGGGTATAGCTGACCGTTTGCCTCTTTCTCTCACTTTATCCCTCCATCCAAGTTGGAATGAGAGTGTGTGTGTTTTAATTTTGGCCAATCTAGCTCCCCTTTTCCTGCACCTTTAAGAGCGCGTGCCTGTTCTCGTAGCTGAAGGTCACTAAAACGCACAAAAAAGCTCTCAGCTCTGCGGTCCAATATAGCGCATGCGCAGTGCCTCGGGACTCATACACTGTCAGACTGCAATATGGCGAGAATGCCTGGCAGCGGGGACCACTGCTGTAGAGATGATGAACCGGACCCGATGGCGGGGGATCGGGAGAGAGACGGAGGCTCGGGCGAGGAAGACGAGGAAGAGATTCAGGAGATCCAGATCACAGGAGAAGAGGGAGAAGTGTCAGAAGAAGAAGCCGAGTTAGAGTGGGAGGAGTGCGGGGAGCCCGACAGCTGCGCTGCTGCCGTGGAAACGGGGGAAGCGGTCCTTATGCGGAATACGGACCAGCTCGAGTCGGCGGCTGGGGACCCGCTTTTCGCCGAGGGAGACATGCACCGCTCCAGGCTCAGCGAGAACACGCGCCTGGCCACTCGGTACGCGGTGCGAATCTTCCGGGAATACCTGACGGAGAAGGCGCAAAGTACGGACTTTGAGAGCATGGACAAGCACGCGCTCTGCAAAGTGCTGCGCTCGTTCTACTCGGAGGCGCGCTCCAAGAGCGGACAGCTGTACAGCAAGTCTTCCCTCATCAGCATCCGGAGCTCGCTCAACCGGTACCTGAACGAGCCCCCGTTCTGCCGCACGCTGGACCTCACCAAGGACCCCGAGCTGCGCAGCGCCAACCTCGCGCTCGCCGCGGTCATACGCAAGCTGGAGGAGCAGGGCGCCGGTCCCGTGGTGCAGAAGCAGGCTATCACGCGCTCCGACCTGAGGAAACTCTACACGTCGGCCGTGTTCAGCGCCAGCTCGCCGTTCGGGCTGCTCAACAAAGTGTGGTTCGAGACTTGCATGTACTTCTGCACGAGGGGGCGGGAGAACCAGCGCGAGCTCGAGGAGGACTCTTTCGGGCTGGCCGTGGACGAGGACGGACGGAAGTTTGTGTACTTCAAAGCGCTCGGGCCGTACCACAAGTCTCGTTCCGCCTCCTGGACGAAAAAAAGATCCGACACGGACGACGACAACCTTCCCCGCATGTACGAGACCGCCACGGAGTTTTGCCCCTACGCGAGCTTCGTCAAGTACCTCTCGAAGCGCAATCCTCTCTGCAAAGCTTTTTTCCAGCGCCCGCGGGATCACTGCAGCGACACCGACACGACCTGGTACGAGAATAAAGCCATCGGCAAGAACCTTCTGGGCACGAGAATGCAGATGCTGTCGCGGGCCGCCAAACTGTCAAAGACCTACACCAACCACTGCATCGGCGCCGTCTCCATAGCAACGCTCAACGGCATTGCGGGCATCGG

Function

symbol description
kctd1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within protein homooligomerization. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in scalp-ear-nipple syndrome. Orthologous to human KCTD1 (potassium channel tetramerization domain containing 1).

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_00824615_00825825.mRNA True 1462 mRNA 0.59 1 824615 826076

Neighbor

gene id symbol gene type direction distance location
CI01000051_00809947_00817933 KCTD1 coding downstream 6682 809947 ~ 817933 (-)
CI01000051_00787723_00808318 NA coding downstream 15591 787723 ~ 809024 (-)
CI01000051_00761469_00766842 NA coding downstream 57773 761453 ~ 766842 (-)
CI01000051_00609069_00611567 NA coding downstream 213048 608741 ~ 611567 (-)
CI01000051_00568303_00576339 NA coding downstream 248276 567867 ~ 576339 (-)
CI01000051_00846746_00856041 AQP4 coding upstream 20426 846502 ~ 856041 (-)
CI01000051_01015039_01066156 CDH2 coding upstream 188730 1014806 ~ 1066317 (-)
CI01000051_01371462_01386606 NA coding upstream 545386 1371462 ~ 1386606 (-)
CI01000051_01468663_01486168 B4GALT5, B4GALT6 coding upstream 642343 1468419 ~ 1487172 (-)
CI01000051_01511542_01512516 NA coding upstream 685067 1511143 ~ 1512554 (-)
G217660 NA non-coding downstream 58677 765579 ~ 765938 (-)
G217647 NA non-coding downstream 110030 713773 ~ 714585 (-)
G217513 NA non-coding downstream 136088 683662 ~ 688527 (-)
G217607 NA non-coding downstream 237243 586863 ~ 587372 (-)
G217606 NA non-coding downstream 239160 585219 ~ 585455 (-)
G217688 NA non-coding upstream 44261 870337 ~ 871281 (-)
G217698 NA non-coding upstream 64870 890946 ~ 891323 (-)
G217731 NA non-coding upstream 117438 943514 ~ 974530 (-)
G217779 NA non-coding upstream 312406 1138482 ~ 1138785 (-)
CI01000051_00560810_00563417 NA other downstream 257460 560768 ~ 563417 (-)
CI01000051_00394082_00407612 MTMR9 other downstream 418820 392720 ~ 407612 (-)
CI01000051_00278614_00302552 NA other downstream 541986 278192 ~ 304373 (-)
CI01000051_00224709_00227613 NA other downstream 581589 224507 ~ 227613 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 883222 1784416 ~ 1787760 (-)
G218728 NA other upstream 1701267 2527343 ~ 2546459 (-)
G218861 NA other upstream 2014194 2840270 ~ 2840632 (-)
CI01000051_02955633_02960400 SCRN2 other upstream 2133512 2955380 ~ 2961148 (-)
G220041 NA other upstream 3329654 4155730 ~ 4158103 (-)

Expression


Co-expression Network