CI01000051_01468663_01486168 (B4GALT5, B4GALT6)


Basic Information

Item Value
gene id CI01000051_01468663_01486168
gene name B4GALT5, B4GALT6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 1468419 ~ 1487172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_01468663_01486168.mRNA
ATAGAAACATAGATATTAACATTTGTGTTTTATTTGCACAGTATTTGCCCTCTTCTCTCTATTTCCTTGCATTTATTACACATCATTTATAGAAAACTGTTAAAAAAAAAACAGATAGGAGCTCAAAAATATTTTTATCAAAATAATGCTGAAAATAGGCAAAGAATAAAAATATTTAAGCACCTGTCAGTGGTATAAAATACCTTTGCGTAAATTAGTTAAATGTTTTATGTAGTTTGATTTTCTATCAGCCTTTTTATCTGATGTTGGATATTTTCTGCAACCGGCCCGTGAAGACTTTTATTTTGAAAGCATTCCTCAAGCGTGAGCCTCTCACTGGCAGCCATTTTGTAGGTCACGCCTACCGGAAACGGTGTCTGCACCTGCACCGACAGCAGAACCGAAATCGGAGGACTCCCTGTCGGGCCTCGTCACGTTTCTCTCGGCTCTCCCACTCCCATCCCGCTCGTTGCCGTTTCCATCCCGTTCCCTCTGCGGGTTGCGCGCCTTTTCACGCCGCCGTGTCGGAGGACTGATCGCTGGAGCGTGGGGGGATTTTACAGAGAGGGGGAAGAAGGAGGGAGGAAGGGCAGGTCCCTCATCATCATCACTTTCACTCCCTTCATCATTTCCAAACATCATCATCATCATCAACGCGACGAGGCGTGTCTGCGCTCACTAGAAACATACCGCAACACTAAACCAGCAGCGGCGGCACCGAACAAAATGAATCGCGTTAACCGCACGCCGAGCCCGGACGCCGTTTGATGTAGCACGTTTTATTATTTATTTATTTTTTGATCTGGAAATTTCTTGACTTTGTTGGGAGAGCGAACGAGTACTGCGGCCTTGCATCCAGCTGAATGAACGATGCGGACTTTACCAGCACCTTGATTTAGCACCACATTTCCAACGGATGACCGTTTCACCACACCAAACAGCGTCTCTTTTCTCCGTTCTGTGTGTTTTTATGGGAGTGACGGATAGCTAGTAGCCGGGATAAAATGTGGAAGTGGAGGCGGCTGATGCGGTTGTCCAACCGCTCCTTAATGGCCTTCATCTTTTTCTTCTCCATGTCCACGACCTGCCTCTACTTCATCTATGTGGCTCCTGGAATAGTCAACACATATTTCTTCATGGTACAGGCTCAGGGTATCATGTTACGAGACAATGTGCGGACCATTGGTCACATGATCAGGCTATACACCAATAAGAACAGCACTCTCAACGGCACAGATTATCCAGATGGAAATAATTCTAGCGAGTATATTGCTCAGCCAACCACATACCTCCCTGAGAACTTCACATATGCTCAGAACCTGCCCTGTCCTGAACGATTACCTTCTATGAAGGGTCAGATGGAAGTCAACATGACGGAGGTTCCTATGGAGGAGATCGAACTGAGGCTCAAACGTCTGGACATTCGATTTGGAGGCCACTGGAAGCCCAAAGATTGCAAGCCACGCTGGAAGGTGGCCATACTAATCCCTTTTAGGAATCGCCATGAGCATCTTCCCATCCTCTTTCAGCATCTCGCCCCTATGCTCCAACGCCAACGCTTGCAGTTTGCCTTTTATGTCATTGAACAGGCGGGTGCTCAGCCGTTTAACCGTGCCATGCTGTTTAACGTGGGCTTTAAAGAGGCTATGAAAGACCTGGACTGGGATTGTGTGGTGTTTCACGACGTCGATCACATCCCAGAAAACGACCGTAATTACTACGGCTGTGGTCAGATGCCTCGACACTTTGCCGCCAAGCTTGACAAGTACATGTACATCCTTCCCTACAATGAGTTTTTCGGTGGAGTAAGTGGACTTACTGTCGAACAATTCCTCAAGATCAATGGCTTTCCCAATGCATTCTGGGGCTGGGGTGGAGAGGACGATGACCTCTGGAACAGGGTTCATTACGCAGGTTTCAATGTGACCAGGCCAGAAGGTGATATTGGCAAATACAAATCTATCCCCCATCACCACAGAGGAGAAGTACAGTTCCTGGGGAGGTACAAGTTGCTGAGGTACTCTAAAGAGCGACAGCATCTAGACGGCTTGAACAATCTGCAGTACTCTCCGGAGATCTCTCTGAGCAGCCTGTATAAGAACATCACGGTCAATCTGAATCCCGAGCTCGCACCCATAGCAGAATACTGACAGGCTTCGCCCCCTCGGTGTGACCCCGTGTCAGAAAATGTGATGCCAAATGCCCTTAAAAACAGGAGTGAAGAGGGCAAAGGCCTGTCTAATGCACAGTTAGTTGTGTGACGTGAGTGTGTGTGCGTGTGTACGATTACTGGATCATATCTGTGAAAGTGTATTAGCGTGACTGCGTGTTTAATTGCATGTTCCTGTGTCCATGCTGGCTTTAGCGAATCAGATCACAACACATTTTAAAAAA

Function

symbol description
b4galt5 Predicted to enable UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within several processes, including otolith development; positive regulation of BMP signaling pathway; and proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in hypoblast; otic vesicle; polster; and trunk. Orthologous to several human genes including B4GALT6 (beta-1,4-galactosyltransferase 6).
b4galt6 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

GO:

id name namespace
GO:0030148 sphingolipid biosynthetic process biological_process

KEGG:

id description
K07553 B4GALT6; beta-1,4-galactosyltransferase 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_01468663_01486168.mRNA True 2394 mRNA 0.47 9 1468419 1487172

Neighbor

gene id symbol gene type direction distance location
CI01000051_01371462_01386606 NA coding downstream 81813 1371462 ~ 1386606 (-)
CI01000051_01015039_01066156 CDH2 coding downstream 402102 1014806 ~ 1066317 (-)
CI01000051_00846746_00856041 AQP4 coding downstream 612378 846502 ~ 856041 (-)
CI01000051_00824615_00825825 KCTD1 coding downstream 642343 824615 ~ 826076 (-)
CI01000051_00809947_00817933 KCTD1 coding downstream 650486 809947 ~ 817933 (-)
CI01000051_01511542_01512516 NA coding upstream 23971 1511143 ~ 1512554 (-)
CI01000051_01528013_01535266 OPN7A coding upstream 40737 1527909 ~ 1535266 (-)
CI01000051_01560871_01627451 TRAPPC8 coding upstream 73656 1560828 ~ 1627665 (-)
CI01000051_01644907_01652696 MCM3L, MCM3 coding upstream 157628 1644800 ~ 1652719 (-)
CI01000051_01716468_01720230 NA coding upstream 229287 1716459 ~ 1720908 (-)
G218521 NA non-coding downstream 25361 1439176 ~ 1443058 (-)
G218497 NA non-coding downstream 79906 1388257 ~ 1388513 (-)
G217813 NA non-coding downstream 290148 1178026 ~ 1178271 (-)
G217791 NA non-coding downstream 312369 1155817 ~ 1156050 (-)
G217789 NA non-coding downstream 312841 1155361 ~ 1155578 (-)
G218532 NA non-coding upstream 3491 1490663 ~ 1490879 (-)
G218558 NA non-coding upstream 58458 1545630 ~ 1545866 (-)
G218568 NA non-coding upstream 178532 1665704 ~ 1665926 (-)
G218569 NA non-coding upstream 179315 1666487 ~ 1666830 (-)
G218571 NA non-coding upstream 182095 1669267 ~ 1669721 (-)
CI01000051_00560810_00563417 NA other downstream 901264 560768 ~ 563417 (-)
CI01000051_00394082_00407612 MTMR9 other downstream 1062624 392720 ~ 407612 (-)
CI01000051_00278614_00302552 NA other downstream 1185790 278192 ~ 304373 (-)
CI01000051_00224709_00227613 NA other downstream 1225393 224507 ~ 227613 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 222126 1784416 ~ 1787760 (-)
G218728 NA other upstream 1040171 2527343 ~ 2546459 (-)
G218861 NA other upstream 1353098 2840270 ~ 2840632 (-)
CI01000051_02955633_02960400 SCRN2 other upstream 1472416 2955380 ~ 2961148 (-)
G220041 NA other upstream 2668558 4155730 ~ 4158103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location